STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_3274ABC transporter, HlyB/MsbA family; Identified by match to protein family HMM. (616 aa)    
Predicted Functional Partners:
CC_0684
ABC transporter, HlyB/MsbA family; Identified by match to protein family HMM.
   
 
0.720
CC_1314
ABC transporter, HlyB/MsbA family; Identified by match to protein family HMM.
  
 
0.657
dnaK
dnaK protein; Acts as a chaperone; Belongs to the heat shock protein 70 family.
 
 0.625
rpmE
Ribosomal protein L31; Binds the 23S rRNA; Belongs to the bacterial ribosomal protein bL31 family. Type A subfamily.
  
    0.563
CC_1518
ABC transporter, ATP-binding protein; Identified by match to protein family HMM.
 
0.538
CC_0838
ABC transporter, ATP-binding protein; Identified by match to protein family HMM.
 
0.520
CC_3280
ABC transporter, ATP-binding protein; Identified by match to protein family HMM.
 
0.518
CC_3566
ABC transporter, ATP-binding protein; Identified by match to protein family HMM.
 
0.511
CC_1276
ABC transporter, ATP-binding protein; Identified by match to protein family HMM.
 
0.510
CC_1147
ABC transporter, ATP-binding protein; Identified by match to protein family HMM.
 
0.494
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.