STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_3279ABC transporter protein, putative; Similar to GP:4467370; identified by sequence similarity; putative. (241 aa)    
Predicted Functional Partners:
CC_3280
ABC transporter, ATP-binding protein; Identified by match to protein family HMM.
 
  
 0.935
CC_3278
Aspartate racemase; Identified by match to TIGR protein family HMM TIGR00035.
       0.773
CC_0649
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.668
CC_3281
Hypothetical protein; Identified by Glimmer2; putative.
       0.580
CC_3282
Transcriptional regulator, Cro/CI family; Identified by match to protein family HMM.
       0.559
CC_0637
Transcriptional regulator, AraC family; Identified by match to protein family HMM.
  
    0.555
CC_2894
Identified by match to PFAM protein family HMM PF02105.
  
    0.521
CC_2888
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.499
CC_0224
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.474
CC_1671
Identified by match to PFAM protein family HMM PF01598.
  
     0.457
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.