CC_3280 protein (Caulobacter vibrioides CB15)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CC_3280

ABC transporter, ATP-binding protein; Identified by match to protein family HMM. (311 aa)

Predicted Functional Partners:

CC_3279

0.935

CC_0611

0.898

CC_3278

0.778

CC_1519

0.760

CC_1759

0.737

phnC

0.581

CC_3282

0.546

CC_3281

0.545

CC_0305

0.531

CC_3274

0.518

Your Current Organism:

Caulobacter vibrioides CB15

NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CC_0305	CC_3280	CC_0305	CC_3280	ABC transporter, HlyB/MsbA family; Identified by match to protein family HMM.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM.	0.531
CC_0611	CC_3280	CC_0611	CC_3280	Nitrate ABC transporter, ATP-binding protein; Identified by match to protein family HMM.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM.	0.898
CC_1519	CC_3280	CC_1519	CC_3280	Hypothetical protein; Identified by Glimmer2; putative.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM.	0.760
CC_1759	CC_3280	CC_1759	CC_3280	ABC transporter, ATP-binding protein; Identified by match to protein family HMM.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM.	0.737
CC_3274	CC_3280	CC_3274	CC_3280	ABC transporter, HlyB/MsbA family; Identified by match to protein family HMM.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM.	0.518
CC_3278	CC_3279	CC_3278	CC_3279	Aspartate racemase; Identified by match to TIGR protein family HMM TIGR00035.	ABC transporter protein, putative; Similar to GP:4467370; identified by sequence similarity; putative.	0.773
CC_3278	CC_3280	CC_3278	CC_3280	Aspartate racemase; Identified by match to TIGR protein family HMM TIGR00035.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM.	0.778
CC_3278	CC_3281	CC_3278	CC_3281	Aspartate racemase; Identified by match to TIGR protein family HMM TIGR00035.	Hypothetical protein; Identified by Glimmer2; putative.	0.545
CC_3278	CC_3282	CC_3278	CC_3282	Aspartate racemase; Identified by match to TIGR protein family HMM TIGR00035.	Transcriptional regulator, Cro/CI family; Identified by match to protein family HMM.	0.545
CC_3279	CC_3278	CC_3279	CC_3278	ABC transporter protein, putative; Similar to GP:4467370; identified by sequence similarity; putative.	Aspartate racemase; Identified by match to TIGR protein family HMM TIGR00035.	0.773
CC_3279	CC_3280	CC_3279	CC_3280	ABC transporter protein, putative; Similar to GP:4467370; identified by sequence similarity; putative.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM.	0.935
CC_3279	CC_3281	CC_3279	CC_3281	ABC transporter protein, putative; Similar to GP:4467370; identified by sequence similarity; putative.	Hypothetical protein; Identified by Glimmer2; putative.	0.580
CC_3279	CC_3282	CC_3279	CC_3282	ABC transporter protein, putative; Similar to GP:4467370; identified by sequence similarity; putative.	Transcriptional regulator, Cro/CI family; Identified by match to protein family HMM.	0.559
CC_3280	CC_0305	CC_3280	CC_0305	ABC transporter, ATP-binding protein; Identified by match to protein family HMM.	ABC transporter, HlyB/MsbA family; Identified by match to protein family HMM.	0.531
CC_3280	CC_0611	CC_3280	CC_0611	ABC transporter, ATP-binding protein; Identified by match to protein family HMM.	Nitrate ABC transporter, ATP-binding protein; Identified by match to protein family HMM.	0.898
CC_3280	CC_1519	CC_3280	CC_1519	ABC transporter, ATP-binding protein; Identified by match to protein family HMM.	Hypothetical protein; Identified by Glimmer2; putative.	0.760
CC_3280	CC_1759	CC_3280	CC_1759	ABC transporter, ATP-binding protein; Identified by match to protein family HMM.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM.	0.737
CC_3280	CC_3274	CC_3280	CC_3274	ABC transporter, ATP-binding protein; Identified by match to protein family HMM.	ABC transporter, HlyB/MsbA family; Identified by match to protein family HMM.	0.518
CC_3280	CC_3278	CC_3280	CC_3278	ABC transporter, ATP-binding protein; Identified by match to protein family HMM.	Aspartate racemase; Identified by match to TIGR protein family HMM TIGR00035.	0.778
CC_3280	CC_3279	CC_3280	CC_3279	ABC transporter, ATP-binding protein; Identified by match to protein family HMM.	ABC transporter protein, putative; Similar to GP:4467370; identified by sequence similarity; putative.	0.935