STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_3292Conserved hypothetical protein; Identified by Glimmer2; putative. (224 aa)    
Predicted Functional Partners:
CC_2102
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
   
 0.931
CC_3319
Conserved hypothetical protein; Identified by Glimmer2; putative; Belongs to the UPF0335 family.
  
  
 0.927
CC_1365
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.892
CC_1887
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.809
CC_3010
Identified by match to protein family HMM.
  
   
 0.786
lysS
lysyl-tRNA synthetase; Identified by match to protein family HMM; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
    0.785
atpF
ATP synthase F0, B subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.
  
   
 0.781
CC_3741
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.771
CC_1211
Hypothetical protein; Identified by Glimmer2; putative.
  
   
 0.748
atpF-2
ATP synthase F0, B' subunit; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family.
  
   
 0.731
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.