STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_3296Conserved hypothetical protein; Identified by Glimmer2; putative. (225 aa)    
Predicted Functional Partners:
coq7
Coq7 family protein; Catalyzes the hydroxylation of 2-nonaprenyl-3-methyl-6- methoxy-1,4-benzoquinol during ubiquinone biosynthesis.
  
 
 0.929
CC_3748
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.745
CC_0189
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.707
mipZ
MipZ; Identified by Glimmer2; putative.
  
    0.692
CC_0699
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.678
CC_1053
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
 
   0.668
rplB
Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.
   
 0.645
rpsU
Ribosomal protein S21; Identified by match to TIGR protein family HMM TIGR00030; Belongs to the bacterial ribosomal protein bS21 family.
       0.569
CC_1546
Penicillin-binding protein 2; Identified by match to protein family HMM.
  
     0.545
CC_1987
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.527
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.