STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_3298Conserved hypothetical protein; Identified by Glimmer2; putative. (476 aa)    
Predicted Functional Partners:
CC_3299
ABC transporter, ATP-binding protein; Identified by match to protein family HMM.
  
 0.962
CC_3300
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.660
CC_3301
Peptidase, M23/M37 family; Identified by match to protein family HMM.
       0.526
CC_0948
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.504
hfsF
HfsF; Identified by match to protein family HMM.
  
   
 0.456
hfsC
HfsC; Identified by Glimmer2; putative.
  
     0.436
CC_2502
Identified by match to protein family HMM.
  
     0.431
hfsA
HfsA; Identified by Glimmer2; putative.
  
     0.407
CC_2071
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.400
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.