STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_3302Hypothetical protein; Identified by Glimmer2; putative. (159 aa)    
Predicted Functional Partners:
CC_0921
Sensor histidine kinase/response regulator; Identified by match to protein family HMM.
      
 0.759
shpA
Hypothetical protein; Identified by Glimmer2; putative.
      
 0.555
CC_1220
Hypothetical protein; Identified by Glimmer2; putative.
      
 0.554
shkA
Sensor histidine kinase/response regulator; Identified by match to protein family HMM.
      
 0.515
CC_3303
NAD(P) transhydrogenase, beta subunit; The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane; Belongs to the PNT beta subunit family.
       0.510
CC_3304
NAD(P) transhydrogenase, alpha2 subunit; Similar to GB:U01158 GB:U05294 PID:436914 PID:452573; identified by sequence similarity; putative.
       0.458
CC_3305
NAD(P) transhydrogenase, alpha subunit; Identified by match to PFAM protein family HMM PF01262.
       0.420
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.