STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_3308Hydrolase, putative; Identified by match to protein family HMM. (307 aa)    
Predicted Functional Partners:
CC_3309
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
    0.778
pheT
phenylalanyl-tRNA synthetase, beta subunit; Identified by match to TIGR protein family HMM TIGR00472; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
  
  
 0.649
CC_1232
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
    0.621
CC_3307
Identified by match to PFAM protein family HMM PF01075.
       0.572
CC_3125
Xaa-Pro dipeptidase, putative; Identified by match to protein family HMM.
      
 0.558
CC_2672
Xaa-Pro dipeptidase, putative; Identified by match to protein family HMM.
   
  
 0.557
CC_3310
RNA polymerase sigma-70 factor, ECF subfamily; Identified by match to protein family HMM; Belongs to the sigma-70 factor family. ECF subfamily.
  
    0.555
CC_3311
Hypothetical protein; Identified by Glimmer2; putative.
       0.547
CC_0356
Hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.532
pssZ
PssZ; Identified by Glimmer2; putative.
    
  0.527
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.