Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 annotation | node2 annotation | score |
| CC_0647 | CC_3310 | Transcriptional activator Chrr, putative; Similar to SP:P40685; identified by sequence similarity; putative. | RNA polymerase sigma-70 factor, ECF subfamily; Identified by match to protein family HMM; Belongs to the sigma-70 factor family. ECF subfamily. | 0.421 |
| CC_0796 | CC_3310 | Alpha-glucosidase, putative; Similar to PID:1519526; identified by sequence similarity; putative. | RNA polymerase sigma-70 factor, ECF subfamily; Identified by match to protein family HMM; Belongs to the sigma-70 factor family. ECF subfamily. | 0.424 |
| CC_3307 | CC_3308 | Identified by match to PFAM protein family HMM PF01075. | Hydrolase, putative; Identified by match to protein family HMM. | 0.572 |
| CC_3307 | CC_3309 | Identified by match to PFAM protein family HMM PF01075. | Conserved hypothetical protein; Identified by Glimmer2; putative. | 0.572 |
| CC_3307 | CC_3310 | Identified by match to PFAM protein family HMM PF01075. | RNA polymerase sigma-70 factor, ECF subfamily; Identified by match to protein family HMM; Belongs to the sigma-70 factor family. ECF subfamily. | 0.417 |
| CC_3307 | CC_3311 | Identified by match to PFAM protein family HMM PF01075. | Hypothetical protein; Identified by Glimmer2; putative. | 0.417 |
| CC_3308 | CC_3307 | Hydrolase, putative; Identified by match to protein family HMM. | Identified by match to PFAM protein family HMM PF01075. | 0.572 |
| CC_3308 | CC_3309 | Hydrolase, putative; Identified by match to protein family HMM. | Conserved hypothetical protein; Identified by Glimmer2; putative. | 0.778 |
| CC_3308 | CC_3310 | Hydrolase, putative; Identified by match to protein family HMM. | RNA polymerase sigma-70 factor, ECF subfamily; Identified by match to protein family HMM; Belongs to the sigma-70 factor family. ECF subfamily. | 0.555 |
| CC_3308 | CC_3311 | Hydrolase, putative; Identified by match to protein family HMM. | Hypothetical protein; Identified by Glimmer2; putative. | 0.547 |
| CC_3309 | CC_3307 | Conserved hypothetical protein; Identified by Glimmer2; putative. | Identified by match to PFAM protein family HMM PF01075. | 0.572 |
| CC_3309 | CC_3308 | Conserved hypothetical protein; Identified by Glimmer2; putative. | Hydrolase, putative; Identified by match to protein family HMM. | 0.778 |
| CC_3309 | CC_3310 | Conserved hypothetical protein; Identified by Glimmer2; putative. | RNA polymerase sigma-70 factor, ECF subfamily; Identified by match to protein family HMM; Belongs to the sigma-70 factor family. ECF subfamily. | 0.549 |
| CC_3309 | CC_3311 | Conserved hypothetical protein; Identified by Glimmer2; putative. | Hypothetical protein; Identified by Glimmer2; putative. | 0.547 |
| CC_3310 | CC_0647 | RNA polymerase sigma-70 factor, ECF subfamily; Identified by match to protein family HMM; Belongs to the sigma-70 factor family. ECF subfamily. | Transcriptional activator Chrr, putative; Similar to SP:P40685; identified by sequence similarity; putative. | 0.421 |
| CC_3310 | CC_0796 | RNA polymerase sigma-70 factor, ECF subfamily; Identified by match to protein family HMM; Belongs to the sigma-70 factor family. ECF subfamily. | Alpha-glucosidase, putative; Similar to PID:1519526; identified by sequence similarity; putative. | 0.424 |
| CC_3310 | CC_3307 | RNA polymerase sigma-70 factor, ECF subfamily; Identified by match to protein family HMM; Belongs to the sigma-70 factor family. ECF subfamily. | Identified by match to PFAM protein family HMM PF01075. | 0.417 |
| CC_3310 | CC_3308 | RNA polymerase sigma-70 factor, ECF subfamily; Identified by match to protein family HMM; Belongs to the sigma-70 factor family. ECF subfamily. | Hydrolase, putative; Identified by match to protein family HMM. | 0.555 |
| CC_3310 | CC_3309 | RNA polymerase sigma-70 factor, ECF subfamily; Identified by match to protein family HMM; Belongs to the sigma-70 factor family. ECF subfamily. | Conserved hypothetical protein; Identified by Glimmer2; putative. | 0.549 |
| CC_3310 | CC_3311 | RNA polymerase sigma-70 factor, ECF subfamily; Identified by match to protein family HMM; Belongs to the sigma-70 factor family. ECF subfamily. | Hypothetical protein; Identified by Glimmer2; putative. | 0.773 |
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