STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_3312Conserved hypothetical protein; Identified by Glimmer2; putative. (451 aa)    
Predicted Functional Partners:
CC_3313
Identified by match to protein family HMM.
  
    0.797
CC_0495
Transcriptional regulator, TetR family, putative; Identified by match to protein family HMM.
 
    0.773
CC_3314
Conserved hypothetical protein; Identified by Glimmer2; putative.
       0.642
CC_1327
Ubiquinone/menaquinone biosynthesis methlytransferase family protein; Identified by match to PFAM protein family HMM PF01209.
 
  
 0.471
CC_1205
Transketolase family protein; Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).
  
    0.464
CC_2849
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.456
CC_3315
Sigma-54 dependent DNA-binding response regulator; Identified by match to protein family HMM.
       0.450
CC_3296
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
 
 0.437
CC_3635
Threonine dehydratase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA.
 
    0.415
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.