STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_3337Peptidase, M20/M25/M40 family; Identified by match to protein family HMM. (805 aa)    
Predicted Functional Partners:
CC_0799
Para-nitrobenzyl esterase; Identified by match to protein family HMM; Belongs to the type-B carboxylesterase/lipase family.
  
 0.491
CC_1398
Hypothetical protein; Identified by Glimmer2; putative.
  
 0.491
CC_2449
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.488
CC_2710
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.472
CC_3336
TonB-dependent receptor, putative; Identified by match to protein family HMM.
  
    0.468
CC_2544
Aminopeptidase, putative; Similar to GP:3386478; identified by sequence similarity; putative.
  
     0.452
CC_1639
Identified by match to protein family HMM.
  
 0.448
CC_3584
Peptidase, M16 family; Identified by match to PFAM protein family HMM PF00675.
 
    0.430
CC_2154
Dipeptidyl peptidase IV; Identified by match to PFAM protein family HMM PF00930.
  
    0.408
CC_0311
Hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.403
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.