STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FtrATranscriptional regulator, AraC family; Identified by match to protein family HMM. (324 aa)    
Predicted Functional Partners:
CC_3366
Hypothetical protein; Identified by Glimmer2; putative.
 
    0.883
FtrB
Transcriptional activator, putative; Identified by match to protein family HMM.
  
  
 0.482
CC_0277
Hypothetical protein; Identified by Glimmer2; putative.
     
 0.479
CC_0762
Cytochrome d ubiquinol oxidase subunit I; Identified by match to PFAM protein family HMM PF01654.
      
 0.437
CC_2115
Hypothetical protein; Identified by Glimmer2; putative.
      
 0.437
CC_1409
Outer membrane protein OmpW; Similar to SP:P21364 GB:X13583 PID:43211 PID:902379 PID:902388; identified by sequence similarity; putative.
      
 0.416
rpoD
RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
   
 
 0.401
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.