CC_3373 protein (Caulobacter vibrioides CB15)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

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experimentally determined

co-expression

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gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

CC_3373

ABC transporter, ATP-binding protein; Identified by match to protein family HMM. (314 aa)

Predicted Functional Partners:

CC_3372

0.974

CC_2244

0.868

CC_1519

0.602

CC_2319

0.600

CC_3374

0.534

CC_3375

0.523

CC_1148

0.423

Your Current Organism:

Caulobacter vibrioides CB15

NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
CC_1148	CC_3373	Conserved hypothetical protein; Identified by Glimmer2; putative.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM.	0.423
CC_1519	CC_3373	Hypothetical protein; Identified by Glimmer2; putative.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM.	0.602
CC_2244	CC_3372	ABC-2 type transporter; Identified by match to PFAM protein family HMM PF01061.	ABC-2 type transporter, putative; Identified by match to protein family HMM.	0.456
CC_2244	CC_3373	ABC-2 type transporter; Identified by match to PFAM protein family HMM PF01061.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM.	0.868
CC_2319	CC_3373	ABC transporter, ATP-binding protein; Identified by match to protein family HMM.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM.	0.600
CC_3372	CC_2244	ABC-2 type transporter, putative; Identified by match to protein family HMM.	ABC-2 type transporter; Identified by match to PFAM protein family HMM PF01061.	0.456
CC_3372	CC_3373	ABC-2 type transporter, putative; Identified by match to protein family HMM.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM.	0.974
CC_3372	CC_3374	ABC-2 type transporter, putative; Identified by match to protein family HMM.	Conserved hypothetical protein; Identified by Glimmer2; putative.	0.523
CC_3372	CC_3375	ABC-2 type transporter, putative; Identified by match to protein family HMM.	Identified by match to protein family HMM.	0.524
CC_3373	CC_1148	ABC transporter, ATP-binding protein; Identified by match to protein family HMM.	Conserved hypothetical protein; Identified by Glimmer2; putative.	0.423
CC_3373	CC_1519	ABC transporter, ATP-binding protein; Identified by match to protein family HMM.	Hypothetical protein; Identified by Glimmer2; putative.	0.602
CC_3373	CC_2244	ABC transporter, ATP-binding protein; Identified by match to protein family HMM.	ABC-2 type transporter; Identified by match to PFAM protein family HMM PF01061.	0.868
CC_3373	CC_2319	ABC transporter, ATP-binding protein; Identified by match to protein family HMM.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM.	0.600
CC_3373	CC_3372	ABC transporter, ATP-binding protein; Identified by match to protein family HMM.	ABC-2 type transporter, putative; Identified by match to protein family HMM.	0.974
CC_3373	CC_3374	ABC transporter, ATP-binding protein; Identified by match to protein family HMM.	Conserved hypothetical protein; Identified by Glimmer2; putative.	0.534
CC_3373	CC_3375	ABC transporter, ATP-binding protein; Identified by match to protein family HMM.	Identified by match to protein family HMM.	0.523
CC_3374	CC_3372	Conserved hypothetical protein; Identified by Glimmer2; putative.	ABC-2 type transporter, putative; Identified by match to protein family HMM.	0.523
CC_3374	CC_3373	Conserved hypothetical protein; Identified by Glimmer2; putative.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM.	0.534
CC_3374	CC_3375	Conserved hypothetical protein; Identified by Glimmer2; putative.	Identified by match to protein family HMM.	0.982
CC_3375	CC_3372	Identified by match to protein family HMM.	ABC-2 type transporter, putative; Identified by match to protein family HMM.	0.524