STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_3375Identified by match to protein family HMM. (310 aa)    
Predicted Functional Partners:
CC_3374
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.964
ftsH
Cell division protein FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family.
   
 0.921
CC_2627
Identified by match to protein family HMM.
   
 0.634
SdhA
Succinate dehydrogenase, flavoprotein subunit; Identified by match to protein family HMM; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.
   
 
 0.580
CC_3376
Hypothetical protein; Identified by Glimmer2; putative.
       0.563
CC_3372
ABC-2 type transporter, putative; Identified by match to protein family HMM.
       0.533
CC_3373
ABC transporter, ATP-binding protein; Identified by match to protein family HMM.
     
 0.531
CC_3584
Peptidase, M16 family; Identified by match to PFAM protein family HMM PF00675.
  
 0.501
CC_2578
Peptidase, M16 family; Identified by match to PFAM protein family HMM PF00675.
  
 0.494
CC_2638
Peptidase, M16 family; Identified by match to PFAM protein family HMM PF00675; Belongs to the peptidase M16 family.
  
 0.492
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.