CC_3389 protein (Caulobacter vibrioides CB15)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CC_3389

Oxidoreductase, FAD-binding; Identified by match to protein family HMM. (460 aa)

Predicted Functional Partners:

CC_0726

0.760

CC_0727

0.745

CC_3391

0.711

CC_3390

0.654

CC_1396

0.624

lldD

0.598

CC_1334

0.584

CC_3392

0.581

ubiA

0.549

CC_3398

0.531

Your Current Organism:

Caulobacter vibrioides CB15

NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CC_0726	CC_0727	CC_0726	CC_0727	Electron transfer flavoprotein, alpha subunit; Identified by match to PFAM protein family HMM PF00766.	Electron transfer flavoprotein, beta subunit; Identified by match to PFAM protein family HMM PF01012.	0.999
CC_0726	CC_1334	CC_0726	CC_1334	Electron transfer flavoprotein, alpha subunit; Identified by match to PFAM protein family HMM PF00766.	Electrotransfer ubiquinone oxidoreductase, putative; Accepts electrons from ETF and reduces ubiquinone.	0.999
CC_0726	CC_3389	CC_0726	CC_3389	Electron transfer flavoprotein, alpha subunit; Identified by match to PFAM protein family HMM PF00766.	Oxidoreductase, FAD-binding; Identified by match to protein family HMM.	0.760
CC_0727	CC_0726	CC_0727	CC_0726	Electron transfer flavoprotein, beta subunit; Identified by match to PFAM protein family HMM PF01012.	Electron transfer flavoprotein, alpha subunit; Identified by match to PFAM protein family HMM PF00766.	0.999
CC_0727	CC_1334	CC_0727	CC_1334	Electron transfer flavoprotein, beta subunit; Identified by match to PFAM protein family HMM PF01012.	Electrotransfer ubiquinone oxidoreductase, putative; Accepts electrons from ETF and reduces ubiquinone.	0.999
CC_0727	CC_3389	CC_0727	CC_3389	Electron transfer flavoprotein, beta subunit; Identified by match to PFAM protein family HMM PF01012.	Oxidoreductase, FAD-binding; Identified by match to protein family HMM.	0.745
CC_1334	CC_0726	CC_1334	CC_0726	Electrotransfer ubiquinone oxidoreductase, putative; Accepts electrons from ETF and reduces ubiquinone.	Electron transfer flavoprotein, alpha subunit; Identified by match to PFAM protein family HMM PF00766.	0.999
CC_1334	CC_0727	CC_1334	CC_0727	Electrotransfer ubiquinone oxidoreductase, putative; Accepts electrons from ETF and reduces ubiquinone.	Electron transfer flavoprotein, beta subunit; Identified by match to PFAM protein family HMM PF01012.	0.999
CC_1334	CC_3389	CC_1334	CC_3389	Electrotransfer ubiquinone oxidoreductase, putative; Accepts electrons from ETF and reduces ubiquinone.	Oxidoreductase, FAD-binding; Identified by match to protein family HMM.	0.584
CC_1334	ubiA	CC_1334	CC_3421	Electrotransfer ubiquinone oxidoreductase, putative; Accepts electrons from ETF and reduces ubiquinone.	4-hydroxybenzoate octaprenyltransferase; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3-octaprenyl-4-hydroxybenzoate.	0.680
CC_1396	CC_3389	CC_1396	CC_3389	L-lactate 2-monooxygenase; Identified by match to PFAM protein family HMM PF01070.	Oxidoreductase, FAD-binding; Identified by match to protein family HMM.	0.624
CC_1396	lldD	CC_1396	CC_1151	L-lactate 2-monooxygenase; Identified by match to PFAM protein family HMM PF01070.	L-lactate dehydrogenase; Catalyzes the conversion of L-lactate to pyruvate. Is coupled to the respiratory chain; Belongs to the FMN-dependent alpha-hydroxy acid dehydrogenase family.	0.921
CC_3389	CC_0726	CC_3389	CC_0726	Oxidoreductase, FAD-binding; Identified by match to protein family HMM.	Electron transfer flavoprotein, alpha subunit; Identified by match to PFAM protein family HMM PF00766.	0.760
CC_3389	CC_0727	CC_3389	CC_0727	Oxidoreductase, FAD-binding; Identified by match to protein family HMM.	Electron transfer flavoprotein, beta subunit; Identified by match to PFAM protein family HMM PF01012.	0.745
CC_3389	CC_1334	CC_3389	CC_1334	Oxidoreductase, FAD-binding; Identified by match to protein family HMM.	Electrotransfer ubiquinone oxidoreductase, putative; Accepts electrons from ETF and reduces ubiquinone.	0.584
CC_3389	CC_1396	CC_3389	CC_1396	Oxidoreductase, FAD-binding; Identified by match to protein family HMM.	L-lactate 2-monooxygenase; Identified by match to PFAM protein family HMM PF01070.	0.624
CC_3389	CC_3390	CC_3389	CC_3390	Oxidoreductase, FAD-binding; Identified by match to protein family HMM.	Sua5/YciO/YrdC family protein; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine.	0.654
CC_3389	CC_3391	CC_3389	CC_3391	Oxidoreductase, FAD-binding; Identified by match to protein family HMM.	Conserved hypothetical protein; Identified by Glimmer2; putative; Belongs to the UPF0312 family.	0.711
CC_3389	CC_3392	CC_3389	CC_3392	Oxidoreductase, FAD-binding; Identified by match to protein family HMM.	Conserved hypothetical protein; Identified by Glimmer2; putative; Belongs to the UPF0312 family.	0.581
CC_3389	CC_3398	CC_3389	CC_3398	Oxidoreductase, FAD-binding; Identified by match to protein family HMM.	Peptidase, M16 family; Identified by match to PFAM protein family HMM PF00675.	0.531