STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_3397Ribosomal-protein-alanine acetyltransferase, putative; Identified by match to protein family HMM. (192 aa)    
Predicted Functional Partners:
CC_3398
Peptidase, M16 family; Identified by match to PFAM protein family HMM PF00675.
  
    0.776
CC_3396
Identified by match to protein family HMM.
 
    0.705
CC_3400
Identified by match to protein family HMM.
 
     0.682
CC_3401
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
    0.671
CC_3399
Threonine synthase; Identified by match to TIGR protein family HMM TIGR00260.
       0.623
CC_3402
Cytochrome c oxidase, subunit III; Identified by match to protein family HMM.
  
    0.482
CC_2349
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.481
CC_0527
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.457
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
    0.431
CC_0317
Acetyltransferase, GNAT family; Identified by match to protein family HMM.
  
   
 0.422
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.