Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CC_3397Ribosomal-protein-alanine acetyltransferase, putative; Identified by match to protein family HMM. (192 aa)    
Predicted Functional Partners:
CC_3398
Peptidase, M16 family; Identified by match to PFAM protein family HMM PF00675.
  
    0.752
CC_3396
Identified by match to protein family HMM.
      0.701
CC_3400
Identified by match to protein family HMM.
 
     0.679
CC_3401
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
     0.663
CC_3399
Threonine synthase; Identified by match to TIGR protein family HMM TIGR00260.
       0.622
CC_2349
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.481
CC_0527
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.457
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
    0.430
CC_3402
Cytochrome c oxidase, subunit III; Identified by match to protein family HMM.
  
    0.418
CC_0317
Acetyltransferase, GNAT family; Identified by match to protein family HMM.
  
   
 0.417
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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