STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_3401Conserved hypothetical protein; Identified by Glimmer2; putative. (120 aa)    
Predicted Functional Partners:
CC_3400
Identified by match to protein family HMM.
 
    0.919
CC_3467
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.798
CC_2345
Conserved hypothetical protein; Identified by Glimmer2; putative; Belongs to the UPF0262 family.
 
  
 0.790
CC_3399
Threonine synthase; Identified by match to TIGR protein family HMM TIGR00260.
       0.787
ctaG
Cytochrome c oxidase assembly protein, putative; Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I; Belongs to the COX11/CtaG family.
 
     0.759
CC_3730
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.731
CC_3397
Ribosomal-protein-alanine acetyltransferase, putative; Identified by match to protein family HMM.
 
    0.671
CC_1652
Hypothetical protein; Identified by Glimmer2; putative.
  
   
 0.664
CC_3402
Cytochrome c oxidase, subunit III; Identified by match to protein family HMM.
 
    0.662
CC_3398
Peptidase, M16 family; Identified by match to PFAM protein family HMM PF00675.
       0.657
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.