Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CC_3418Conserved hypothetical protein; Identified by Glimmer2; putative. (504 aa)    
Predicted Functional Partners:
CC_3419
Conserved hypothetical protein; Identified by Glimmer2; putative.
   
 
 0.621
CC_3417
Hypothetical protein; Identified by Glimmer2; putative.
       0.586
aroE
Shikimate 5-dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA).
    
   0.479
CC_0788
Hypothetical protein; Identified by Glimmer2; putative.
    
 0.472
CC_2801
Hypothetical protein; Identified by Glimmer2; putative.
    
 0.472
CC_0500
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.436
CC_3031
Phospholipase C; Similar to GB:M30223 SP:P15713 GB:M59304 PID:151496 PID:151498; identified by sequence similarity; putative.
  
     0.421
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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