CC_3420 protein (Caulobacter vibrioides CB15)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Experiments

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[Homology]

Score

CC_3420

ABC transporter, HlyB/MsbA family; Identified by match to protein family HMM. (832 aa)

Predicted Functional Partners:

CC_0684

0.743

dnaK

0.688

CC_1314

0.653

ubiA

0.611

CC_1518

0.537

CC_1147

0.525

CC_0838

0.519

CC_3280

0.517

CC_1639

0.506

CC_2039

0.491

Your Current Organism:

Caulobacter vibrioides CB15

NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CC_0684	CC_3420	CC_0684	CC_3420	ABC transporter, HlyB/MsbA family; Identified by match to protein family HMM.	ABC transporter, HlyB/MsbA family; Identified by match to protein family HMM.	0.743
CC_0838	CC_3420	CC_0838	CC_3420	ABC transporter, ATP-binding protein; Identified by match to protein family HMM.	ABC transporter, HlyB/MsbA family; Identified by match to protein family HMM.	0.519
CC_1147	CC_3420	CC_1147	CC_3420	ABC transporter, ATP-binding protein; Identified by match to protein family HMM.	ABC transporter, HlyB/MsbA family; Identified by match to protein family HMM.	0.525
CC_1314	CC_3420	CC_1314	CC_3420	ABC transporter, HlyB/MsbA family; Identified by match to protein family HMM.	ABC transporter, HlyB/MsbA family; Identified by match to protein family HMM.	0.653
CC_1314	dnaK	CC_1314	CC_0010	ABC transporter, HlyB/MsbA family; Identified by match to protein family HMM.	dnaK protein; Acts as a chaperone; Belongs to the heat shock protein 70 family.	0.553
CC_1518	CC_3420	CC_1518	CC_3420	ABC transporter, ATP-binding protein; Identified by match to protein family HMM.	ABC transporter, HlyB/MsbA family; Identified by match to protein family HMM.	0.537
CC_1639	CC_3420	CC_1639	CC_3420	Identified by match to protein family HMM.	ABC transporter, HlyB/MsbA family; Identified by match to protein family HMM.	0.506
CC_1639	dnaK	CC_1639	CC_0010	Identified by match to protein family HMM.	dnaK protein; Acts as a chaperone; Belongs to the heat shock protein 70 family.	0.802
CC_2039	CC_3420	CC_2039	CC_3420	Conserved hypothetical protein; Identified by Glimmer2; putative.	ABC transporter, HlyB/MsbA family; Identified by match to protein family HMM.	0.491
CC_3280	CC_3420	CC_3280	CC_3420	ABC transporter, ATP-binding protein; Identified by match to protein family HMM.	ABC transporter, HlyB/MsbA family; Identified by match to protein family HMM.	0.517
CC_3420	CC_0684	CC_3420	CC_0684	ABC transporter, HlyB/MsbA family; Identified by match to protein family HMM.	ABC transporter, HlyB/MsbA family; Identified by match to protein family HMM.	0.743
CC_3420	CC_0838	CC_3420	CC_0838	ABC transporter, HlyB/MsbA family; Identified by match to protein family HMM.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM.	0.519
CC_3420	CC_1147	CC_3420	CC_1147	ABC transporter, HlyB/MsbA family; Identified by match to protein family HMM.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM.	0.525
CC_3420	CC_1314	CC_3420	CC_1314	ABC transporter, HlyB/MsbA family; Identified by match to protein family HMM.	ABC transporter, HlyB/MsbA family; Identified by match to protein family HMM.	0.653
CC_3420	CC_1518	CC_3420	CC_1518	ABC transporter, HlyB/MsbA family; Identified by match to protein family HMM.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM.	0.537
CC_3420	CC_1639	CC_3420	CC_1639	ABC transporter, HlyB/MsbA family; Identified by match to protein family HMM.	Identified by match to protein family HMM.	0.506
CC_3420	CC_2039	CC_3420	CC_2039	ABC transporter, HlyB/MsbA family; Identified by match to protein family HMM.	Conserved hypothetical protein; Identified by Glimmer2; putative.	0.491
CC_3420	CC_3280	CC_3420	CC_3280	ABC transporter, HlyB/MsbA family; Identified by match to protein family HMM.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM.	0.517
CC_3420	dnaK	CC_3420	CC_0010	ABC transporter, HlyB/MsbA family; Identified by match to protein family HMM.	dnaK protein; Acts as a chaperone; Belongs to the heat shock protein 70 family.	0.688
CC_3420	ubiA	CC_3420	CC_3421	ABC transporter, HlyB/MsbA family; Identified by match to protein family HMM.	4-hydroxybenzoate octaprenyltransferase; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3-octaprenyl-4-hydroxybenzoate.	0.611