STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_3422Conserved hypothetical protein; Identified by Glimmer2; putative. (329 aa)    
Predicted Functional Partners:
CC_3423
Conserved hypothetical protein; Identified by Glimmer2; putative.
      0.837
CC_3459
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.596
CC_2394
Vanillate O-demethylase, reductase subunit; Identified by match to protein family HMM.
  
  
 0.569
CC_3424
Conserved hypothetical protein; Identified by Glimmer2; putative.
       0.566
ubiA
4-hydroxybenzoate octaprenyltransferase; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3-octaprenyl-4-hydroxybenzoate.
     
 0.538
CC_1671
Identified by match to PFAM protein family HMM PF01598.
 
  
 0.523
CC_3664
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.475
CC_1442
3-oxoacyl-(acyl-carrier-protein) synthase III, putative; Identified by match to protein family HMM.
 
  
 0.464
CC_3088
Identified by match to protein family HMM; Belongs to the GST superfamily.
  
    0.452
CC_1176
Identified by match to protein family HMM.
 
    0.449
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.