STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_3434Peptidase, M23/M37 family; Identified by match to protein family HMM. (351 aa)    
Predicted Functional Partners:
CC_2217
Hypothetical protein; Identified by Glimmer2; putative.
 
 
 
 0.869
CC_3301
Peptidase, M23/M37 family; Identified by match to protein family HMM.
 
   
 0.853
CC_2248
Peptidase, M23/M37 family; Identified by match to protein family HMM.
 
   
 0.824
CC_3034
Peptidase, M23/M37 family; Identified by match to protein family HMM.
 
   
 0.823
CC_3435
Carboxyl-terminal protease; Identified by match to protein family HMM; Belongs to the peptidase S41A family.
 
  
 0.805
dipM
Peptidase, M23/M37 family; Identified by match to protein family HMM.
 
  
 0.792
CC_2297
Peptidase, M23/M37 family; Identified by match to protein family HMM.
     
 0.775
rlmH
Conserved hypothetical protein; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family.
       0.772
CC_1876
N-acetylmuramoyl-L-alanine amidase; Identified by match to PFAM protein family HMM PF01520.
 
  
 0.664
gpmA
Phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate; Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily.
  
    0.604
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.