CC_3454 protein (Caulobacter vibrioides CB15)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

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experimentally determined

co-expression

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gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

CC_3454

Identified by match to PFAM protein family HMM PF00441. (435 aa)

Predicted Functional Partners:

CC_0076

0.975

CC_3462

0.971

CC_0779

0.953

CC_1967

0.952

CC_2170

0.931

CC_2168

0.915

CC_0299

0.914

CC_1813

0.881

CC_0265

0.843

CC_0947

0.822

Your Current Organism:

Caulobacter vibrioides CB15

NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
CC_0076	CC_0265	Fatty oxidation complex, alpha subunit; Identified by match to PFAM protein family HMM PF00725.	Identified by match to protein family HMM; Belongs to the thiolase-like superfamily. Thiolase family.	0.998
CC_0076	CC_0779	Fatty oxidation complex, alpha subunit; Identified by match to PFAM protein family HMM PF00725.	Identified by match to protein family HMM; Belongs to the thiolase-like superfamily. Thiolase family.	0.997
CC_0076	CC_0947	Fatty oxidation complex, alpha subunit; Identified by match to PFAM protein family HMM PF00725.	Identified by match to PFAM protein family HMM PF00378.	0.697
CC_0076	CC_1813	Fatty oxidation complex, alpha subunit; Identified by match to PFAM protein family HMM PF00725.	Identified by match to PFAM protein family HMM PF00378.	0.839
CC_0076	CC_1967	Fatty oxidation complex, alpha subunit; Identified by match to PFAM protein family HMM PF00725.	Conserved hypothetical protein; Identified by Glimmer2; putative.	0.997
CC_0076	CC_2168	Fatty oxidation complex, alpha subunit; Identified by match to PFAM protein family HMM PF00725.	acetyl/propionyl-CoA carboxylase, alpha subunit; Identified by match to PFAM protein family HMM PF00289.	0.932
CC_0076	CC_2170	Fatty oxidation complex, alpha subunit; Identified by match to PFAM protein family HMM PF00725.	propionyl-CoA carboxylase, beta subunit, putative; Identified by match to protein family HMM.	0.958
CC_0076	CC_3454	Fatty oxidation complex, alpha subunit; Identified by match to PFAM protein family HMM PF00725.	Identified by match to PFAM protein family HMM PF00441.	0.975
CC_0076	CC_3462	Fatty oxidation complex, alpha subunit; Identified by match to PFAM protein family HMM PF00725.	Identified by match to protein family HMM; Belongs to the thiolase-like superfamily. Thiolase family.	0.997
CC_0265	CC_0076	Identified by match to protein family HMM; Belongs to the thiolase-like superfamily. Thiolase family.	Fatty oxidation complex, alpha subunit; Identified by match to PFAM protein family HMM PF00725.	0.998
CC_0265	CC_0779	Identified by match to protein family HMM; Belongs to the thiolase-like superfamily. Thiolase family.	Identified by match to protein family HMM; Belongs to the thiolase-like superfamily. Thiolase family.	0.915
CC_0265	CC_0947	Identified by match to protein family HMM; Belongs to the thiolase-like superfamily. Thiolase family.	Identified by match to PFAM protein family HMM PF00378.	0.589
CC_0265	CC_1813	Identified by match to protein family HMM; Belongs to the thiolase-like superfamily. Thiolase family.	Identified by match to PFAM protein family HMM PF00378.	0.972
CC_0265	CC_1967	Identified by match to protein family HMM; Belongs to the thiolase-like superfamily. Thiolase family.	Conserved hypothetical protein; Identified by Glimmer2; putative.	0.917
CC_0265	CC_3454	Identified by match to protein family HMM; Belongs to the thiolase-like superfamily. Thiolase family.	Identified by match to PFAM protein family HMM PF00441.	0.843
CC_0265	CC_3462	Identified by match to protein family HMM; Belongs to the thiolase-like superfamily. Thiolase family.	Identified by match to protein family HMM; Belongs to the thiolase-like superfamily. Thiolase family.	0.920
CC_0299	CC_1813	Conserved hypothetical protein; Identified by Glimmer2; putative.	Identified by match to PFAM protein family HMM PF00378.	0.564
CC_0299	CC_3454	Conserved hypothetical protein; Identified by Glimmer2; putative.	Identified by match to PFAM protein family HMM PF00441.	0.914
CC_0779	CC_0076	Identified by match to protein family HMM; Belongs to the thiolase-like superfamily. Thiolase family.	Fatty oxidation complex, alpha subunit; Identified by match to PFAM protein family HMM PF00725.	0.997
CC_0779	CC_0265	Identified by match to protein family HMM; Belongs to the thiolase-like superfamily. Thiolase family.	Identified by match to protein family HMM; Belongs to the thiolase-like superfamily. Thiolase family.	0.915