CC_3454 protein (Caulobacter vibrioides CB15)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CC_3454

Identified by match to PFAM protein family HMM PF00441. (435 aa)

Predicted Functional Partners:

CC_1967

0.941

CC_2170

0.923

CC_0299

0.916

CC_0076

0.907

CC_3462

0.895

CC_1813

0.871

CC_0353

0.832

CC_1723

0.825

CC_0265

0.808

CC_0947

0.805

Your Current Organism:

Caulobacter vibrioides CB15

NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
CC_0076	CC_0265	Fatty oxidation complex, alpha subunit; Identified by match to PFAM protein family HMM PF00725.	Identified by match to protein family HMM; Belongs to the thiolase-like superfamily. Thiolase family.	0.998
CC_0076	CC_0353	Fatty oxidation complex, alpha subunit; Identified by match to PFAM protein family HMM PF00725.	Identified by match to PFAM protein family HMM PF00378.	0.951
CC_0076	CC_0947	Fatty oxidation complex, alpha subunit; Identified by match to PFAM protein family HMM PF00725.	Identified by match to PFAM protein family HMM PF00378.	0.666
CC_0076	CC_1723	Fatty oxidation complex, alpha subunit; Identified by match to PFAM protein family HMM PF00725.	Identified by match to PFAM protein family HMM PF00378.	0.928
CC_0076	CC_1813	Fatty oxidation complex, alpha subunit; Identified by match to PFAM protein family HMM PF00725.	Identified by match to PFAM protein family HMM PF00378.	0.804
CC_0076	CC_1967	Fatty oxidation complex, alpha subunit; Identified by match to PFAM protein family HMM PF00725.	Conserved hypothetical protein; Identified by Glimmer2; putative.	0.995
CC_0076	CC_2170	Fatty oxidation complex, alpha subunit; Identified by match to PFAM protein family HMM PF00725.	propionyl-CoA carboxylase, beta subunit, putative; Identified by match to protein family HMM.	0.951
CC_0076	CC_3454	Fatty oxidation complex, alpha subunit; Identified by match to PFAM protein family HMM PF00725.	Identified by match to PFAM protein family HMM PF00441.	0.907
CC_0076	CC_3462	Fatty oxidation complex, alpha subunit; Identified by match to PFAM protein family HMM PF00725.	Identified by match to protein family HMM; Belongs to the thiolase-like superfamily. Thiolase family.	0.996
CC_0265	CC_0076	Identified by match to protein family HMM; Belongs to the thiolase-like superfamily. Thiolase family.	Fatty oxidation complex, alpha subunit; Identified by match to PFAM protein family HMM PF00725.	0.998
CC_0265	CC_0353	Identified by match to protein family HMM; Belongs to the thiolase-like superfamily. Thiolase family.	Identified by match to PFAM protein family HMM PF00378.	0.584
CC_0265	CC_0947	Identified by match to protein family HMM; Belongs to the thiolase-like superfamily. Thiolase family.	Identified by match to PFAM protein family HMM PF00378.	0.593
CC_0265	CC_1723	Identified by match to protein family HMM; Belongs to the thiolase-like superfamily. Thiolase family.	Identified by match to PFAM protein family HMM PF00378.	0.595
CC_0265	CC_1813	Identified by match to protein family HMM; Belongs to the thiolase-like superfamily. Thiolase family.	Identified by match to PFAM protein family HMM PF00378.	0.961
CC_0265	CC_1967	Identified by match to protein family HMM; Belongs to the thiolase-like superfamily. Thiolase family.	Conserved hypothetical protein; Identified by Glimmer2; putative.	0.917
CC_0265	CC_3454	Identified by match to protein family HMM; Belongs to the thiolase-like superfamily. Thiolase family.	Identified by match to PFAM protein family HMM PF00441.	0.808
CC_0265	CC_3462	Identified by match to protein family HMM; Belongs to the thiolase-like superfamily. Thiolase family.	Identified by match to protein family HMM; Belongs to the thiolase-like superfamily. Thiolase family.	0.921
CC_0299	CC_1813	Conserved hypothetical protein; Identified by Glimmer2; putative.	Identified by match to PFAM protein family HMM PF00378.	0.595
CC_0299	CC_3454	Conserved hypothetical protein; Identified by Glimmer2; putative.	Identified by match to PFAM protein family HMM PF00441.	0.916
CC_0353	CC_0076	Identified by match to PFAM protein family HMM PF00378.	Fatty oxidation complex, alpha subunit; Identified by match to PFAM protein family HMM PF00725.	0.951