Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| CC_1386 | CC_1528 | CC_1386 | CC_1528 | single-stranded-DNA-specific exonuclease RecJ; Identified by match to TIGR protein family HMM TIGR00644. | DNA helicase II; Identified by match to protein family HMM. | 0.560 |
| CC_1386 | CC_3465 | CC_1386 | CC_3465 | single-stranded-DNA-specific exonuclease RecJ; Identified by match to TIGR protein family HMM TIGR00644. | ATP-dependent DNA helicase RecQ; Identified by match to protein family HMM. | 0.931 |
| CC_1386 | dnaN | CC_1386 | CC_0156 | single-stranded-DNA-specific exonuclease RecJ; Identified by match to TIGR protein family HMM TIGR00644. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.575 |
| CC_1386 | mutL | CC_1386 | CC_0695 | single-stranded-DNA-specific exonuclease RecJ; Identified by match to TIGR protein family HMM TIGR00644. | DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex (By similarity). | 0.631 |
| CC_1386 | mutS | CC_1386 | CC_0012 | single-stranded-DNA-specific exonuclease RecJ; Identified by match to TIGR protein family HMM TIGR00644. | DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity. | 0.660 |
| CC_1386 | polA | CC_1386 | CC_3464 | single-stranded-DNA-specific exonuclease RecJ; Identified by match to TIGR protein family HMM TIGR00644. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.545 |
| CC_1386 | topA | CC_1386 | CC_2451 | single-stranded-DNA-specific exonuclease RecJ; Identified by match to TIGR protein family HMM TIGR00644. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.420 |
| CC_1528 | CC_1386 | CC_1528 | CC_1386 | DNA helicase II; Identified by match to protein family HMM. | single-stranded-DNA-specific exonuclease RecJ; Identified by match to TIGR protein family HMM TIGR00644. | 0.560 |
| CC_1528 | CC_3465 | CC_1528 | CC_3465 | DNA helicase II; Identified by match to protein family HMM. | ATP-dependent DNA helicase RecQ; Identified by match to protein family HMM. | 0.920 |
| CC_1528 | dnaN | CC_1528 | CC_0156 | DNA helicase II; Identified by match to protein family HMM. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.906 |
| CC_1528 | mutL | CC_1528 | CC_0695 | DNA helicase II; Identified by match to protein family HMM. | DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex (By similarity). | 0.857 |
| CC_1528 | mutS | CC_1528 | CC_0012 | DNA helicase II; Identified by match to protein family HMM. | DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity. | 0.520 |
| CC_1528 | polA | CC_1528 | CC_3464 | DNA helicase II; Identified by match to protein family HMM. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.699 |
| CC_1528 | recA | CC_1528 | CC_1087 | DNA helicase II; Identified by match to protein family HMM. | recA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.904 |
| CC_1528 | topA | CC_1528 | CC_2451 | DNA helicase II; Identified by match to protein family HMM. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.735 |
| CC_1823 | CC_3465 | CC_1823 | CC_3465 | DNA polymerase III, delta prime subunit; Identified by match to protein family HMM. | ATP-dependent DNA helicase RecQ; Identified by match to protein family HMM. | 0.745 |
| CC_1823 | dnaN | CC_1823 | CC_0156 | DNA polymerase III, delta prime subunit; Identified by match to protein family HMM. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.999 |
| CC_1823 | polA | CC_1823 | CC_3464 | DNA polymerase III, delta prime subunit; Identified by match to protein family HMM. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.942 |
| CC_1823 | recA | CC_1823 | CC_1087 | DNA polymerase III, delta prime subunit; Identified by match to protein family HMM. | recA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.739 |
| CC_1823 | topA | CC_1823 | CC_2451 | DNA polymerase III, delta prime subunit; Identified by match to protein family HMM. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.713 |
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