CC_3501 protein (Caulobacter vibrioides CB15)

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

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a 3D structure is known or predicted

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Score

CC_3501

Conserved hypothetical protein; Identified by Glimmer2; putative. (470 aa)

Predicted Functional Partners:

CC_3502

0.855

CC_3503

0.777

CC_3500

0.670

CC_1129

0.530

CC_3499

0.522

CC_0982

0.496

CC_1778

0.485

CC_1782

0.477

CC_1130

0.467

CC_0981

0.450

Your Current Organism:

Caulobacter vibrioides CB15

NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
CC_0981	CC_0982	RNA polymerase sigma-70 factor, ECF subfamily; Identified by match to protein family HMM; Belongs to the sigma-70 factor family. ECF subfamily.	Regulatory protein PupR, putative; Similar to GB:X77918 PID:525260; identified by sequence similarity; putative.	0.960
CC_0981	CC_1129	RNA polymerase sigma-70 factor, ECF subfamily; Identified by match to protein family HMM; Belongs to the sigma-70 factor family. ECF subfamily.	RNA polymerase sigma-70 factor, ECF subfamily; Identified by match to protein family HMM; Belongs to the sigma-70 factor family. ECF subfamily.	0.946
CC_0981	CC_1130	RNA polymerase sigma-70 factor, ECF subfamily; Identified by match to protein family HMM; Belongs to the sigma-70 factor family. ECF subfamily.	Transcriptional regulator, putative; Similar to SP:P23485 GB:M63115 PID:145931 PID:537133 GB:U00096; identified by sequence similarity; putative.	0.835
CC_0981	CC_1778	RNA polymerase sigma-70 factor, ECF subfamily; Identified by match to protein family HMM; Belongs to the sigma-70 factor family. ECF subfamily.	TonB-dependent receptor; Identified by match to protein family HMM.	0.503
CC_0981	CC_3501	RNA polymerase sigma-70 factor, ECF subfamily; Identified by match to protein family HMM; Belongs to the sigma-70 factor family. ECF subfamily.	Conserved hypothetical protein; Identified by Glimmer2; putative.	0.450
CC_0982	CC_0981	Regulatory protein PupR, putative; Similar to GB:X77918 PID:525260; identified by sequence similarity; putative.	RNA polymerase sigma-70 factor, ECF subfamily; Identified by match to protein family HMM; Belongs to the sigma-70 factor family. ECF subfamily.	0.960
CC_0982	CC_1129	Regulatory protein PupR, putative; Similar to GB:X77918 PID:525260; identified by sequence similarity; putative.	RNA polymerase sigma-70 factor, ECF subfamily; Identified by match to protein family HMM; Belongs to the sigma-70 factor family. ECF subfamily.	0.831
CC_0982	CC_1778	Regulatory protein PupR, putative; Similar to GB:X77918 PID:525260; identified by sequence similarity; putative.	TonB-dependent receptor; Identified by match to protein family HMM.	0.811
CC_0982	CC_1782	Regulatory protein PupR, putative; Similar to GB:X77918 PID:525260; identified by sequence similarity; putative.	Hypothetical protein; Identified by Glimmer2; putative.	0.549
CC_0982	CC_3500	Regulatory protein PupR, putative; Similar to GB:X77918 PID:525260; identified by sequence similarity; putative.	TonB-dependent receptor; Identified by match to protein family HMM.	0.594
CC_0982	CC_3501	Regulatory protein PupR, putative; Similar to GB:X77918 PID:525260; identified by sequence similarity; putative.	Conserved hypothetical protein; Identified by Glimmer2; putative.	0.496
CC_1129	CC_0981	RNA polymerase sigma-70 factor, ECF subfamily; Identified by match to protein family HMM; Belongs to the sigma-70 factor family. ECF subfamily.	RNA polymerase sigma-70 factor, ECF subfamily; Identified by match to protein family HMM; Belongs to the sigma-70 factor family. ECF subfamily.	0.946
CC_1129	CC_0982	RNA polymerase sigma-70 factor, ECF subfamily; Identified by match to protein family HMM; Belongs to the sigma-70 factor family. ECF subfamily.	Regulatory protein PupR, putative; Similar to GB:X77918 PID:525260; identified by sequence similarity; putative.	0.831
CC_1129	CC_1130	RNA polymerase sigma-70 factor, ECF subfamily; Identified by match to protein family HMM; Belongs to the sigma-70 factor family. ECF subfamily.	Transcriptional regulator, putative; Similar to SP:P23485 GB:M63115 PID:145931 PID:537133 GB:U00096; identified by sequence similarity; putative.	0.959
CC_1129	CC_1778	RNA polymerase sigma-70 factor, ECF subfamily; Identified by match to protein family HMM; Belongs to the sigma-70 factor family. ECF subfamily.	TonB-dependent receptor; Identified by match to protein family HMM.	0.460
CC_1129	CC_1782	RNA polymerase sigma-70 factor, ECF subfamily; Identified by match to protein family HMM; Belongs to the sigma-70 factor family. ECF subfamily.	Hypothetical protein; Identified by Glimmer2; putative.	0.445
CC_1129	CC_3501	RNA polymerase sigma-70 factor, ECF subfamily; Identified by match to protein family HMM; Belongs to the sigma-70 factor family. ECF subfamily.	Conserved hypothetical protein; Identified by Glimmer2; putative.	0.530
CC_1130	CC_0981	Transcriptional regulator, putative; Similar to SP:P23485 GB:M63115 PID:145931 PID:537133 GB:U00096; identified by sequence similarity; putative.	RNA polymerase sigma-70 factor, ECF subfamily; Identified by match to protein family HMM; Belongs to the sigma-70 factor family. ECF subfamily.	0.835
CC_1130	CC_1129	Transcriptional regulator, putative; Similar to SP:P23485 GB:M63115 PID:145931 PID:537133 GB:U00096; identified by sequence similarity; putative.	RNA polymerase sigma-70 factor, ECF subfamily; Identified by match to protein family HMM; Belongs to the sigma-70 factor family. ECF subfamily.	0.959
CC_1130	CC_1778	Transcriptional regulator, putative; Similar to SP:P23485 GB:M63115 PID:145931 PID:537133 GB:U00096; identified by sequence similarity; putative.	TonB-dependent receptor; Identified by match to protein family HMM.	0.770