CC_3501 protein (Caulobacter vibrioides CB15)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CC_3501

Conserved hypothetical protein; Identified by Glimmer2; putative. (470 aa)

Predicted Functional Partners:

CC_3502

0.849

CC_3503

0.782

CC_3500

0.659

CC_1129

0.537

CC_3499

0.525

CC_1778

0.498

CC_0982

0.493

CC_1782

0.483

CC_1130

0.458

CC_0981

0.455

Your Current Organism:

Caulobacter vibrioides CB15

NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
CC_0981	CC_0982	RNA polymerase sigma-70 factor, ECF subfamily; Identified by match to protein family HMM; Belongs to the sigma-70 factor family. ECF subfamily.	Regulatory protein PupR, putative; Similar to GB:X77918 PID:525260; identified by sequence similarity; putative.	0.962
CC_0981	CC_1129	RNA polymerase sigma-70 factor, ECF subfamily; Identified by match to protein family HMM; Belongs to the sigma-70 factor family. ECF subfamily.	RNA polymerase sigma-70 factor, ECF subfamily; Identified by match to protein family HMM; Belongs to the sigma-70 factor family. ECF subfamily.	0.933
CC_0981	CC_1130	RNA polymerase sigma-70 factor, ECF subfamily; Identified by match to protein family HMM; Belongs to the sigma-70 factor family. ECF subfamily.	Transcriptional regulator, putative; Similar to SP:P23485 GB:M63115 PID:145931 PID:537133 GB:U00096; identified by sequence similarity; putative.	0.842
CC_0981	CC_1778	RNA polymerase sigma-70 factor, ECF subfamily; Identified by match to protein family HMM; Belongs to the sigma-70 factor family. ECF subfamily.	TonB-dependent receptor; Identified by match to protein family HMM.	0.502
CC_0981	CC_3501	RNA polymerase sigma-70 factor, ECF subfamily; Identified by match to protein family HMM; Belongs to the sigma-70 factor family. ECF subfamily.	Conserved hypothetical protein; Identified by Glimmer2; putative.	0.455
CC_0982	CC_0981	Regulatory protein PupR, putative; Similar to GB:X77918 PID:525260; identified by sequence similarity; putative.	RNA polymerase sigma-70 factor, ECF subfamily; Identified by match to protein family HMM; Belongs to the sigma-70 factor family. ECF subfamily.	0.962
CC_0982	CC_1129	Regulatory protein PupR, putative; Similar to GB:X77918 PID:525260; identified by sequence similarity; putative.	RNA polymerase sigma-70 factor, ECF subfamily; Identified by match to protein family HMM; Belongs to the sigma-70 factor family. ECF subfamily.	0.839
CC_0982	CC_1778	Regulatory protein PupR, putative; Similar to GB:X77918 PID:525260; identified by sequence similarity; putative.	TonB-dependent receptor; Identified by match to protein family HMM.	0.792
CC_0982	CC_1782	Regulatory protein PupR, putative; Similar to GB:X77918 PID:525260; identified by sequence similarity; putative.	Hypothetical protein; Identified by Glimmer2; putative.	0.542
CC_0982	CC_3500	Regulatory protein PupR, putative; Similar to GB:X77918 PID:525260; identified by sequence similarity; putative.	TonB-dependent receptor; Identified by match to protein family HMM.	0.597
CC_0982	CC_3501	Regulatory protein PupR, putative; Similar to GB:X77918 PID:525260; identified by sequence similarity; putative.	Conserved hypothetical protein; Identified by Glimmer2; putative.	0.493
CC_1129	CC_0981	RNA polymerase sigma-70 factor, ECF subfamily; Identified by match to protein family HMM; Belongs to the sigma-70 factor family. ECF subfamily.	RNA polymerase sigma-70 factor, ECF subfamily; Identified by match to protein family HMM; Belongs to the sigma-70 factor family. ECF subfamily.	0.933
CC_1129	CC_0982	RNA polymerase sigma-70 factor, ECF subfamily; Identified by match to protein family HMM; Belongs to the sigma-70 factor family. ECF subfamily.	Regulatory protein PupR, putative; Similar to GB:X77918 PID:525260; identified by sequence similarity; putative.	0.839
CC_1129	CC_1130	RNA polymerase sigma-70 factor, ECF subfamily; Identified by match to protein family HMM; Belongs to the sigma-70 factor family. ECF subfamily.	Transcriptional regulator, putative; Similar to SP:P23485 GB:M63115 PID:145931 PID:537133 GB:U00096; identified by sequence similarity; putative.	0.961
CC_1129	CC_1778	RNA polymerase sigma-70 factor, ECF subfamily; Identified by match to protein family HMM; Belongs to the sigma-70 factor family. ECF subfamily.	TonB-dependent receptor; Identified by match to protein family HMM.	0.460
CC_1129	CC_1782	RNA polymerase sigma-70 factor, ECF subfamily; Identified by match to protein family HMM; Belongs to the sigma-70 factor family. ECF subfamily.	Hypothetical protein; Identified by Glimmer2; putative.	0.445
CC_1129	CC_3500	RNA polymerase sigma-70 factor, ECF subfamily; Identified by match to protein family HMM; Belongs to the sigma-70 factor family. ECF subfamily.	TonB-dependent receptor; Identified by match to protein family HMM.	0.400
CC_1129	CC_3501	RNA polymerase sigma-70 factor, ECF subfamily; Identified by match to protein family HMM; Belongs to the sigma-70 factor family. ECF subfamily.	Conserved hypothetical protein; Identified by Glimmer2; putative.	0.537
CC_1130	CC_0981	Transcriptional regulator, putative; Similar to SP:P23485 GB:M63115 PID:145931 PID:537133 GB:U00096; identified by sequence similarity; putative.	RNA polymerase sigma-70 factor, ECF subfamily; Identified by match to protein family HMM; Belongs to the sigma-70 factor family. ECF subfamily.	0.842
CC_1130	CC_1129	Transcriptional regulator, putative; Similar to SP:P23485 GB:M63115 PID:145931 PID:537133 GB:U00096; identified by sequence similarity; putative.	RNA polymerase sigma-70 factor, ECF subfamily; Identified by match to protein family HMM; Belongs to the sigma-70 factor family. ECF subfamily.	0.961