STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_3504Identified by match to PFAM protein family HMM PF01431. (706 aa)    
Predicted Functional Partners:
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
  
 0.647
CC_0543
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
    0.502
ruvB
Holliday junction DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing.
   
    0.457
CC_3501
Conserved hypothetical protein; Identified by Glimmer2; putative.
       0.454
CC_0675
Articulin, putative; Similar to GP:3095084; identified by sequence similarity; putative.
  
    0.447
CC_3502
Conserved hypothetical protein; Identified by Glimmer2; putative.
       0.443
CC_3503
SCO1/2 family protein; Similar to SP:P23833 PID:536256 PID:666104; identified by sequence similarity; putative.
       0.443
flaEY
Regulatory protein FlaEY; Functions in trans to modulate the level of transcription of the flagellin genes and several genes encoding chemotaxis functions. It is itself temporally controlled.
  
    0.442
CC_3413
Peptide transporter; Identified by match to protein family HMM.
 
  
 0.438
CC_0410
TPR domain protein; Identified by match to protein family HMM.
  
    0.437
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.