STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fdxBFerredoxin, 2Fe-2S; Identified by match to protein family HMM. (106 aa)    
Predicted Functional Partners:
CC_0462
Hypothetical protein; Identified by Glimmer2; putative.
  
 0.963
CC_1865
Aminotransferase, class V; Identified by match to protein family HMM.
 
 0.948
CC_3606
Glutamate synthase, small subunit; Identified by match to protein family HMM.
    
 0.909
CC_3525
Ferredoxin reductase; Identified by match to protein family HMM.
 
  
 0.902
CC_0063
Identified by match to protein family HMM; Belongs to the cytochrome P450 family.
 
 0.890
CC_1858
Identified by match to protein family HMM; Belongs to the HesB/IscA family.
 
 
 0.884
CC_2494
Identified by match to protein family HMM; Belongs to the cytochrome P450 family.
 
 0.849
CC_0946
Identified by match to protein family HMM; Belongs to the cytochrome P450 family.
 
 0.847
nuoI
NADH dehydrogenase I, I subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.
  
 
 0.823
nuoD
NADH dehydrogenase I, D subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 49 kDa subunit family.
  
 
 0.807
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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