CC_3566 protein (Caulobacter vibrioides CB15)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CC_3566

ABC transporter, ATP-binding protein; Identified by match to protein family HMM. (294 aa)

Predicted Functional Partners:

CC_3565

0.953

CC_1147

0.915

CC_2319

0.883

CC_0611

0.865

CC_1519

0.757

CC_3564

0.754

CC_3696

0.661

lolD2

0.605

CC_3274

0.511

CC_3420

0.488

Your Current Organism:

Caulobacter vibrioides CB15

NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CC_0611	CC_1147	CC_0611	CC_1147	Nitrate ABC transporter, ATP-binding protein; Identified by match to protein family HMM.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM.	0.704
CC_0611	CC_3566	CC_0611	CC_3566	Nitrate ABC transporter, ATP-binding protein; Identified by match to protein family HMM.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM.	0.865
CC_1147	CC_0611	CC_1147	CC_0611	ABC transporter, ATP-binding protein; Identified by match to protein family HMM.	Nitrate ABC transporter, ATP-binding protein; Identified by match to protein family HMM.	0.704
CC_1147	CC_1519	CC_1147	CC_1519	ABC transporter, ATP-binding protein; Identified by match to protein family HMM.	Hypothetical protein; Identified by Glimmer2; putative.	0.759
CC_1147	CC_3274	CC_1147	CC_3274	ABC transporter, ATP-binding protein; Identified by match to protein family HMM.	ABC transporter, HlyB/MsbA family; Identified by match to protein family HMM.	0.494
CC_1147	CC_3420	CC_1147	CC_3420	ABC transporter, ATP-binding protein; Identified by match to protein family HMM.	ABC transporter, HlyB/MsbA family; Identified by match to protein family HMM.	0.525
CC_1147	CC_3566	CC_1147	CC_3566	ABC transporter, ATP-binding protein; Identified by match to protein family HMM.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM.	0.915
CC_1519	CC_1147	CC_1519	CC_1147	Hypothetical protein; Identified by Glimmer2; putative.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM.	0.759
CC_1519	CC_3566	CC_1519	CC_3566	Hypothetical protein; Identified by Glimmer2; putative.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM.	0.757
CC_2319	CC_3566	CC_2319	CC_3566	ABC transporter, ATP-binding protein; Identified by match to protein family HMM.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM.	0.883
CC_2319	CC_3696	CC_2319	CC_3696	ABC transporter, ATP-binding protein; Identified by match to protein family HMM.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM.	0.909
CC_3274	CC_1147	CC_3274	CC_1147	ABC transporter, HlyB/MsbA family; Identified by match to protein family HMM.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM.	0.494
CC_3274	CC_3566	CC_3274	CC_3566	ABC transporter, HlyB/MsbA family; Identified by match to protein family HMM.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM.	0.511
CC_3420	CC_1147	CC_3420	CC_1147	ABC transporter, HlyB/MsbA family; Identified by match to protein family HMM.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM.	0.525
CC_3420	CC_3566	CC_3420	CC_3566	ABC transporter, HlyB/MsbA family; Identified by match to protein family HMM.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM.	0.488
CC_3564	CC_3565	CC_3564	CC_3565	Conserved hypothetical protein; Identified by Glimmer2; putative.	Hypothetical protein; Identified by Glimmer2; putative.	0.784
CC_3564	CC_3566	CC_3564	CC_3566	Conserved hypothetical protein; Identified by Glimmer2; putative.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM.	0.754
CC_3565	CC_3564	CC_3565	CC_3564	Hypothetical protein; Identified by Glimmer2; putative.	Conserved hypothetical protein; Identified by Glimmer2; putative.	0.784
CC_3565	CC_3566	CC_3565	CC_3566	Hypothetical protein; Identified by Glimmer2; putative.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM.	0.953
CC_3566	CC_0611	CC_3566	CC_0611	ABC transporter, ATP-binding protein; Identified by match to protein family HMM.	Nitrate ABC transporter, ATP-binding protein; Identified by match to protein family HMM.	0.865