CC_3570 protein (Caulobacter vibrioides CB15)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CC_3570

Penicillin-binding protein, 1A family; Identified by match to protein family HMM. (690 aa)

Predicted Functional Partners:

CC_3571

0.916

CC_0498

0.665

CC_1953

0.649

CC_1875

0.518

CC_0252

0.497

PBP1a

0.486

Your Current Organism:

Caulobacter vibrioides CB15

NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CC_0252	CC_0498	CC_0252	CC_0498	Penicillin-binding protein, 1A family; Identified by match to protein family HMM.	Hypothetical protein; Identified by Glimmer2; putative.	0.555
CC_0252	CC_1875	CC_0252	CC_1875	Penicillin-binding protein, 1A family; Identified by match to protein family HMM.	Penicillin-binding protein, 1A family; Identified by match to protein family HMM.	0.955
CC_0252	CC_1953	CC_0252	CC_1953	Penicillin-binding protein, 1A family; Identified by match to protein family HMM.	Hypothetical protein; Identified by Glimmer2; putative.	0.553
CC_0252	CC_3570	CC_0252	CC_3570	Penicillin-binding protein, 1A family; Identified by match to protein family HMM.	Penicillin-binding protein, 1A family; Identified by match to protein family HMM.	0.497
CC_0498	CC_0252	CC_0498	CC_0252	Hypothetical protein; Identified by Glimmer2; putative.	Penicillin-binding protein, 1A family; Identified by match to protein family HMM.	0.555
CC_0498	CC_1875	CC_0498	CC_1875	Hypothetical protein; Identified by Glimmer2; putative.	Penicillin-binding protein, 1A family; Identified by match to protein family HMM.	0.553
CC_0498	CC_1953	CC_0498	CC_1953	Hypothetical protein; Identified by Glimmer2; putative.	Hypothetical protein; Identified by Glimmer2; putative.	0.759
CC_0498	CC_3570	CC_0498	CC_3570	Hypothetical protein; Identified by Glimmer2; putative.	Penicillin-binding protein, 1A family; Identified by match to protein family HMM.	0.665
CC_0498	PBP1a	CC_0498	CC_1516	Hypothetical protein; Identified by Glimmer2; putative.	Penicillin-binding protein, 1A family; Identified by match to protein family HMM.	0.433
CC_1875	CC_0252	CC_1875	CC_0252	Penicillin-binding protein, 1A family; Identified by match to protein family HMM.	Penicillin-binding protein, 1A family; Identified by match to protein family HMM.	0.955
CC_1875	CC_0498	CC_1875	CC_0498	Penicillin-binding protein, 1A family; Identified by match to protein family HMM.	Hypothetical protein; Identified by Glimmer2; putative.	0.553
CC_1875	CC_1953	CC_1875	CC_1953	Penicillin-binding protein, 1A family; Identified by match to protein family HMM.	Hypothetical protein; Identified by Glimmer2; putative.	0.553
CC_1875	CC_3570	CC_1875	CC_3570	Penicillin-binding protein, 1A family; Identified by match to protein family HMM.	Penicillin-binding protein, 1A family; Identified by match to protein family HMM.	0.518
CC_1875	PBP1a	CC_1875	CC_1516	Penicillin-binding protein, 1A family; Identified by match to protein family HMM.	Penicillin-binding protein, 1A family; Identified by match to protein family HMM.	0.590
CC_1953	CC_0252	CC_1953	CC_0252	Hypothetical protein; Identified by Glimmer2; putative.	Penicillin-binding protein, 1A family; Identified by match to protein family HMM.	0.553
CC_1953	CC_0498	CC_1953	CC_0498	Hypothetical protein; Identified by Glimmer2; putative.	Hypothetical protein; Identified by Glimmer2; putative.	0.759
CC_1953	CC_1875	CC_1953	CC_1875	Hypothetical protein; Identified by Glimmer2; putative.	Penicillin-binding protein, 1A family; Identified by match to protein family HMM.	0.553
CC_1953	CC_3570	CC_1953	CC_3570	Hypothetical protein; Identified by Glimmer2; putative.	Penicillin-binding protein, 1A family; Identified by match to protein family HMM.	0.649
CC_1953	PBP1a	CC_1953	CC_1516	Hypothetical protein; Identified by Glimmer2; putative.	Penicillin-binding protein, 1A family; Identified by match to protein family HMM.	0.431
CC_3570	CC_0252	CC_3570	CC_0252	Penicillin-binding protein, 1A family; Identified by match to protein family HMM.	Penicillin-binding protein, 1A family; Identified by match to protein family HMM.	0.497