STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_3574Alanine dehydrogenase; Identified by match to TIGR protein family HMM TIGR00518; Belongs to the AlaDH/PNT family. (370 aa)    
Predicted Functional Partners:
alr
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
  
 
 0.980
CC_3303
NAD(P) transhydrogenase, beta subunit; The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane; Belongs to the PNT beta subunit family.
      0.909
CC_2233
Hypothetical protein; Identified by Glimmer2; putative.
      
 0.730
CC_2362
Conserved hypothetical protein; Identified by Glimmer2; putative.
      
 0.730
CC_3385
Conserved hypothetical protein; Identified by Glimmer2; putative; Belongs to the UPF0246 family.
      
 0.730
CC_3691
Conserved hypothetical protein; Identified by Glimmer2; putative.
      
 0.730
CC_0572
Conserved hypothetical protein; Identified by Glimmer2; putative.
      
 0.719
CC_3573
Transcriptional regulator, AsnC family; Identified by match to protein family HMM.
     
 0.590
CC_0804
Proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
  
  
 0.545
CC_3572
Carbonic anhydrase; Identified by match to protein family HMM.
       0.509
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.