Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CC_3577Conserved hypothetical protein; Identified by Glimmer2; putative. (313 aa)    
Predicted Functional Partners:
CC_0019
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.904
CC_0022
Isoquinoline 1-oxidoreductase, alpha subunit; Identified by match to protein family HMM.
 
  
 0.827
CC_2270
Isoquinoline 1-oxidoreductase, alpha subunit; Identified by match to protein family HMM.
 
  
 0.827
CC_2269
Isoquinoline 1-oxidoreductase, beta subunit; Identified by match to protein family HMM.
 
  
 0.824
CC_0021
Isoquinoline 1-oxidoreductase, beta subunit; Identified by match to protein family HMM.
 
  
 0.812
CC_2618
Xanthine dehydrogenase, C-terminal subunit; Identified by match to PFAM protein family HMM PF01315.
 
  
 0.617
CC_3576
Conserved hypothetical protein; Identified by Glimmer2; putative.
       0.564
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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