STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_3602Hypothetical protein; Identified by Glimmer2; putative. (220 aa)    
Predicted Functional Partners:
CC_3603
Ribonuclease D, putative; Identified by match to protein family HMM.
 
     0.812
lptD
Conserved hypothetical protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
 
   
 0.690
CC_3601
Conserved hypothetical protein; Identified by Glimmer2; putative.
     
 0.687
CC_1725
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.659
CC_3600
ABC transporter, ATP-binding protein; Identified by match to protein family HMM.
       0.652
CC_1365
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.582
CC_1691
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
   
 0.564
CC_3538
Helicase, UvrD/Rep family; Identified by match to protein family HMM; Belongs to the helicase family. UvrD subfamily.
  
     0.532
CC_2323
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.530
CC_0376
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.519
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.