STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_3644Conserved hypothetical protein; Identified by Glimmer2; putative. (342 aa)    
Predicted Functional Partners:
CC_3610
DNA ligase, ATP-dependent, putative; Identified by match to protein family HMM.
 0.988
CC_2040
ATP-dependent RNA helicase, DEAD/DEAH family; Identified by match to protein family HMM.
 
    0.804
CC_2041
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
    0.799
CC_1485
Conserved hypothetical protein; Identified by Glimmer2; putative.
   
 0.791
CC_0323
Conserved hypothetical protein; Identified by Glimmer2; putative.
    
 0.787
CC_1413
Hypothetical protein; Identified by Glimmer2; putative.
    
 0.787
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
 0.703
pssZ
PssZ; Identified by Glimmer2; putative.
   
 
 0.702
CC_2058
Hypothetical protein; Identified by Glimmer2; putative.
  
 0.623
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.611
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.