Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| CC_0657 | CC_3650 | CC_0657 | CC_3650 | Photosynthesis protein modulator; Identified by match to protein family HMM. | Identified by match to protein family HMM. | 0.537 |
| CC_0657 | nnrE | CC_0657 | CC_1965 | Photosynthesis protein modulator; Identified by match to protein family HMM. | YjeF family protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epim [...] | 0.839 |
| CC_0657 | rph | CC_0657 | CC_0152 | Photosynthesis protein modulator; Identified by match to protein family HMM. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.533 |
| CC_0835 | CC_3650 | CC_0835 | CC_3650 | ATP-dependent RNA helicase, DEAD/DEAH box family; Identified by match to protein family HMM. | Identified by match to protein family HMM. | 0.553 |
| CC_0835 | nnrE | CC_0835 | CC_1965 | ATP-dependent RNA helicase, DEAD/DEAH box family; Identified by match to protein family HMM. | YjeF family protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epim [...] | 0.839 |
| CC_0835 | rnr | CC_0835 | CC_2453 | ATP-dependent RNA helicase, DEAD/DEAH box family; Identified by match to protein family HMM. | Exoribonuclease, VacB and RNase II family; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | 0.440 |
| CC_0835 | rph | CC_0835 | CC_0152 | ATP-dependent RNA helicase, DEAD/DEAH box family; Identified by match to protein family HMM. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.533 |
| CC_1847 | CC_3650 | CC_1847 | CC_3650 | ATP-dependent RNA helicase, DEAD/DEAH box family; Identified by match to protein family HMM; Belongs to the DEAD box helicase family. | Identified by match to protein family HMM. | 0.542 |
| CC_1847 | nnrE | CC_1847 | CC_1965 | ATP-dependent RNA helicase, DEAD/DEAH box family; Identified by match to protein family HMM; Belongs to the DEAD box helicase family. | YjeF family protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epim [...] | 0.839 |
| CC_1847 | rnr | CC_1847 | CC_2453 | ATP-dependent RNA helicase, DEAD/DEAH box family; Identified by match to protein family HMM; Belongs to the DEAD box helicase family. | Exoribonuclease, VacB and RNase II family; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | 0.440 |
| CC_1847 | rph | CC_1847 | CC_0152 | ATP-dependent RNA helicase, DEAD/DEAH box family; Identified by match to protein family HMM; Belongs to the DEAD box helicase family. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.533 |
| CC_2652 | CC_3650 | CC_2652 | CC_3650 | Identified by match to protein family HMM. | Identified by match to protein family HMM. | 0.444 |
| CC_3650 | CC_0657 | CC_3650 | CC_0657 | Identified by match to protein family HMM. | Photosynthesis protein modulator; Identified by match to protein family HMM. | 0.537 |
| CC_3650 | CC_0835 | CC_3650 | CC_0835 | Identified by match to protein family HMM. | ATP-dependent RNA helicase, DEAD/DEAH box family; Identified by match to protein family HMM. | 0.553 |
| CC_3650 | CC_1847 | CC_3650 | CC_1847 | Identified by match to protein family HMM. | ATP-dependent RNA helicase, DEAD/DEAH box family; Identified by match to protein family HMM; Belongs to the DEAD box helicase family. | 0.542 |
| CC_3650 | CC_2652 | CC_3650 | CC_2652 | Identified by match to protein family HMM. | Identified by match to protein family HMM. | 0.444 |
| CC_3650 | ffh | CC_3650 | CC_3653 | Identified by match to protein family HMM. | Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual componen [...] | 0.547 |
| CC_3650 | nnrE | CC_3650 | CC_1965 | Identified by match to protein family HMM. | YjeF family protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epim [...] | 0.868 |
| CC_3650 | rimM | CC_3650 | CC_3651 | Identified by match to protein family HMM. | 16S rRNA processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family. | 0.755 |
| CC_3650 | rnr | CC_3650 | CC_2453 | Identified by match to protein family HMM. | Exoribonuclease, VacB and RNase II family; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | 0.592 |
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