STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_3656Identified by match to protein family HMM. (348 aa)    
Predicted Functional Partners:
CC_2999
Citrate lyase, beta subunit, putative; Similar to SP:O53078; identified by sequence similarity; putative; Belongs to the HpcH/HpaI aldolase family.
 
 
 0.983
CC_3087
acyl-CoA dehydrogenase, putative; Identified by match to PFAM protein family HMM PF00441.
 
 0.983
CC_3085
Alcohol dehydrogenase; Identified by match to protein family HMM.
 
 
 0.816
CC_3657
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
    0.784
CC_3081
methylmalonyl-CoA mutase, alpha subunit; Identified by match to PFAM protein family HMM PF01642.
 
  
 0.781
CC_3659
Citrate lyase beta subunit, putative; Similar to SP:O53078; identified by sequence similarity; putative; Belongs to the HpcH/HpaI aldolase family.
 
  
 0.682
mdh
Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family.
  
  
 0.576
CC_1431
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
 
 0.567
CC_1813
Identified by match to PFAM protein family HMM PF00378.
  
 0.550
CC_3189
Fatty oxidation complex, alpha subunit; Identified by match to PFAM protein family HMM PF00725.
  
 0.549
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.