STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_3667Aconitate hydratase 1; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate. (903 aa)    
Predicted Functional Partners:
CC_2522
Isocitrate dehydrogenase, NADP-dependent; Identified by match to TIGR protein family HMM TIGR00127; Belongs to the isocitrate and isopropylmalate dehydrogenases family.
  
 0.996
CC_3642
Citrate synthase; Identified by match to protein family HMM; Belongs to the citrate synthase family.
 
 0.994
CC_3643
Citrate synthase; Identified by match to protein family HMM.
 
 0.994
CC_1906
Citrate synthase; Identified by match to protein family HMM; Belongs to the citrate synthase family.
 
 0.992
CC_1764
Isocitrate lyase; Identified by match to protein family HMM.
   
 
 0.932
rplS
Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
   
 
 0.850
rpmB
Ribosomal protein L28; Identified by match to TIGR protein family HMM TIGR00009; Belongs to the bacterial ribosomal protein bL28 family.
   
   0.816
rpmF
Ribosomal protein L32; Identified by match to protein family HMM; Belongs to the bacterial ribosomal protein bL32 family.
   
   0.814
SdhB
Succinate dehydrogenase, iron-sulfur protein; Identified by match to protein family HMM; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.
  
 
 0.812
hisD
Histidinol dehydrogenase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine.
  
  
 0.810
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.