STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_3722D-isomer specific 2-hydroxyacid dehydrogenases family protein; Identified by match to PFAM protein family HMM PF00389; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (344 aa)    
Predicted Functional Partners:
CC_2999
Citrate lyase, beta subunit, putative; Similar to SP:O53078; identified by sequence similarity; putative; Belongs to the HpcH/HpaI aldolase family.
 
  
 0.924
CC_1765
Malate synthase; Identified by match to PFAM protein family HMM PF01274; Belongs to the malate synthase family.
  
 
 0.920
CC_2910
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
 
 0.913
CC_1764
Isocitrate lyase; Identified by match to protein family HMM.
   
 
 0.908
CC_1495
4-hydroxy-2-oxoglutarate aldolase/2-deydro-3-deoxyphosphogluconate aldolase; Identified by match to protein family HMM.
    
 0.903
CC_1643
Hydrolase, haloacid dehalogenase-like family; Identified by match to PFAM protein family HMM PF00702.
    
  0.902
gph
Phosphoglycolate phosphatase; Specifically catalyzes the dephosphorylation of 2- phosphoglycolate. Is involved in the dissimilation of the intracellular 2-phosphoglycolate formed during the DNA repair of 3'-phosphoglycolate ends, a major class of DNA lesions induced by oxidative stress. Belongs to the HAD-like hydrolase superfamily. CbbY/CbbZ/Gph/YieH family.
    
  0.902
CC_3216
Phosphoserine aminotransferase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine.
 
    
 0.782
CC_2142
Hypothetical protein; Identified by Glimmer2; putative.
 
 
    0.677
CC_3721
Conserved hypothetical protein; Identified by Glimmer2; putative.
       0.593
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.