STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_3748Conserved hypothetical protein; Identified by Glimmer2; putative. (234 aa)    
Predicted Functional Partners:
CC_0699
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
    0.782
CC_1365
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
    0.780
CC_3750
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.758
CC_1653
PQQ enzyme repeat family protein; Identified by match to protein family HMM.
  
    0.752
CC_3296
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.745
HolA
Hypothetical protein; Identified by Glimmer2; putative.
 
    0.745
CC_2038
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.718
leuS
leucyl-tRNA synthetase; Identified by match to TIGR protein family HMM TIGR00396; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
    0.715
CC_1546
Penicillin-binding protein 2; Identified by match to protein family HMM.
  
     0.713
CC_0189
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.699
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.