STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_3759Quinone oxidoreductase; Identified by match to protein family HMM. (321 aa)    
Predicted Functional Partners:
CC_1678
3-oxoacyl-(acyl-carrier-protein) synthase II; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.
 
 
  
 0.903
CC_3758
Carboxymethylenebutenolidase; Identified by match to PFAM protein family HMM PF01738.
 
    0.793
CC_3525
Ferredoxin reductase; Identified by match to protein family HMM.
      
 0.771
CC_1345
Transcriptional regulator, TetR family; Identified by match to protein family HMM.
   
  
 0.734
CC_2876
Transcriptional regulator, TetR family; Identified by match to protein family HMM.
   
  
 0.734
msrQ
Conserved hypothetical protein; Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, [...]
  
  
 0.732
CC_0495
Transcriptional regulator, TetR family, putative; Identified by match to protein family HMM.
      
 0.730
CC_0992
Transcriptional regulator, TetR family; Identified by match to protein family HMM.
      
 0.730
CC_1786
Transcriptional regulator, TetR family; Identified by match to protein family HMM.
      
 0.730
CC_2080
Transcriptional regulator, TetR family; Identified by match to protein family HMM.
      
 0.730
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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