Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AOX99238.1 | AOX99239.1 | BJP62_01475 | BJP62_01480 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | Ubiquinone biosynthesis protein UbiB; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.601 |
| AOX99239.1 | AOX99238.1 | BJP62_01480 | BJP62_01475 | Ubiquinone biosynthesis protein UbiB; Derived by automated computational analysis using gene prediction method: Protein Homology. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | 0.601 |
| AOX99239.1 | AOX99297.1 | BJP62_01480 | BJP62_01815 | Ubiquinone biosynthesis protein UbiB; Derived by automated computational analysis using gene prediction method: Protein Homology. | SAM-dependent methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.457 |
| AOX99239.1 | AOX99815.1 | BJP62_01480 | BJP62_04695 | Ubiquinone biosynthesis protein UbiB; Derived by automated computational analysis using gene prediction method: Protein Homology. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.500 |
| AOX99239.1 | AOY01781.1 | BJP62_01480 | BJP62_15770 | Ubiquinone biosynthesis protein UbiB; Derived by automated computational analysis using gene prediction method: Protein Homology. | NADH-quinone oxidoreductase subunit E; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.410 |
| AOX99239.1 | nuoC | BJP62_01480 | BJP62_15760 | Ubiquinone biosynthesis protein UbiB; Derived by automated computational analysis using gene prediction method: Protein Homology. | NADH-quinone oxidoreductase subunit C; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 30 kDa subunit family. | 0.441 |
| AOX99239.1 | ubiD | BJP62_01480 | BJP62_04420 | Ubiquinone biosynthesis protein UbiB; Derived by automated computational analysis using gene prediction method: Protein Homology. | 3-octaprenyl-4-hydroxybenzoate decarboxylase; Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol, an intermediate step in ubiquinone biosynthesis. | 0.520 |
| AOX99239.1 | ubiG | BJP62_01480 | BJP62_04795 | Ubiquinone biosynthesis protein UbiB; Derived by automated computational analysis using gene prediction method: Protein Homology. | Bifunctional 3-demethylubiquinol 3-O-methyltransferase/2-polyprenyl-6-hydroxyphenol methylase; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the methyltransferase superfamily. UbiG/COQ3 family. | 0.466 |
| AOX99239.1 | ubiX | BJP62_01480 | BJP62_13185 | Ubiquinone biosynthesis protein UbiB; Derived by automated computational analysis using gene prediction method: Protein Homology. | Aromatic acid decarboxylase; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family. | 0.503 |
| AOX99297.1 | AOX99239.1 | BJP62_01815 | BJP62_01480 | SAM-dependent methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Ubiquinone biosynthesis protein UbiB; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.457 |
| AOX99815.1 | AOX99239.1 | BJP62_04695 | BJP62_01480 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Ubiquinone biosynthesis protein UbiB; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.500 |
| AOY01781.1 | AOX99239.1 | BJP62_15770 | BJP62_01480 | NADH-quinone oxidoreductase subunit E; Derived by automated computational analysis using gene prediction method: Protein Homology. | Ubiquinone biosynthesis protein UbiB; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.410 |
| AOY01781.1 | nuoC | BJP62_15770 | BJP62_15760 | NADH-quinone oxidoreductase subunit E; Derived by automated computational analysis using gene prediction method: Protein Homology. | NADH-quinone oxidoreductase subunit C; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 30 kDa subunit family. | 0.999 |
| nuoC | AOX99239.1 | BJP62_15760 | BJP62_01480 | NADH-quinone oxidoreductase subunit C; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 30 kDa subunit family. | Ubiquinone biosynthesis protein UbiB; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.441 |
| nuoC | AOY01781.1 | BJP62_15760 | BJP62_15770 | NADH-quinone oxidoreductase subunit C; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 30 kDa subunit family. | NADH-quinone oxidoreductase subunit E; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.999 |
| ubiD | AOX99239.1 | BJP62_04420 | BJP62_01480 | 3-octaprenyl-4-hydroxybenzoate decarboxylase; Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol, an intermediate step in ubiquinone biosynthesis. | Ubiquinone biosynthesis protein UbiB; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.520 |
| ubiD | ubiX | BJP62_04420 | BJP62_13185 | 3-octaprenyl-4-hydroxybenzoate decarboxylase; Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol, an intermediate step in ubiquinone biosynthesis. | Aromatic acid decarboxylase; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family. | 0.996 |
| ubiG | AOX99239.1 | BJP62_04795 | BJP62_01480 | Bifunctional 3-demethylubiquinol 3-O-methyltransferase/2-polyprenyl-6-hydroxyphenol methylase; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the methyltransferase superfamily. UbiG/COQ3 family. | Ubiquinone biosynthesis protein UbiB; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.466 |
| ubiX | AOX99239.1 | BJP62_13185 | BJP62_01480 | Aromatic acid decarboxylase; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family. | Ubiquinone biosynthesis protein UbiB; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.503 |
| ubiX | ubiD | BJP62_13185 | BJP62_04420 | Aromatic acid decarboxylase; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family. | 3-octaprenyl-4-hydroxybenzoate decarboxylase; Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol, an intermediate step in ubiquinone biosynthesis. | 0.996 |