STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AOX99859.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (154 aa)    
Predicted Functional Partners:
AOX99861.1
RNA polymerase subunit sigma; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.951
AOX99863.1
DNA methylase N-4; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the N(4)/N(6)-methyltransferase family.
     0.947
AOX99860.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
      0.929
ruvA
Holliday junction DNA helicase RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB.
  
 0.926
AOX99858.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.902
AOX99856.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.898
AOX99853.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.889
AOX99854.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.889
AOX99852.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.884
AOX99862.1
DNA modification methylase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the N(4)/N(6)-methyltransferase family.
     0.872
Your Current Organism:
Jeongeupia sp. USM3
NCBI taxonomy Id: 1906741
Other names: J. sp. USM3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.