STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AOY02210.1Peptidase M15; Derived by automated computational analysis using gene prediction method: Protein Homology. (177 aa)    
Predicted Functional Partners:
AOX99939.1
Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.928
AOX99933.1
Type VI secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.870
AOX99935.1
Fimbrial protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.842
AOY02197.1
Type VI secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.813
AOX99926.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.813
AOX99942.1
Type VI secretion system protein ImpK; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.813
AOY01074.1
Type VI secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.812
AOY01803.1
Type VI secretion system protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
   
 0.812
AOX99260.1
Type VI secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.811
AOY01993.1
Type VI secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.810
Your Current Organism:
Jeongeupia sp. USM3
NCBI taxonomy Id: 1906741
Other names: J. sp. USM3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.