STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OOF87951.1C-terminal processing peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S41A family. (691 aa)    
Predicted Functional Partners:
OOF89097.1
Lipoprotein NlpI-like protein; May be involved in cell division.
  
 
 
 0.797
OOF89744.1
Bifunctional aspartate kinase/homoserine dehydrogenase I; Derived by automated computational analysis using gene prediction method: Protein Homology; In the C-terminal section; belongs to the homoserine dehydrogenase family.
 
  
  0.758
OOF88796.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.754
OOF88938.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
  0.754
OOF88390.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.754
OOF88342.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.754
OOF87952.1
RNA chaperone ProQ; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.735
OOF88019.1
Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
   
  0.725
OOF87950.1
L,D-transpeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.670
OOF88978.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 
 0.652
Your Current Organism:
Rodentibacter ratti
NCBI taxonomy Id: 1906745
Other names: Bisgaard Taxon 22, CCUG 69665, DSM 103977, Haemophilus sp. HK445, Haemophilus sp. HK447, Pasteurellaceae bacterium Ac81, Pasteurellaceae bacterium F75, Pasteurellaceae bacterium H1983213011, Pasteurellaceae bacterium Ppn157, Pasteurellaceae bacterium Ppn158, R. ratti, Rodentibacter ratti Adhikary et al. 2017, strain F75
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.