STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rlmJ23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ; Specifically methylates the adenine in position 2030 of 23S rRNA. (281 aa)    
Predicted Functional Partners:
OOF87715.1
Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.603
OOF87721.1
Amidophosphoribosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.435
OOF87716.1
Competence protein ComA; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.431
OOF87717.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.431
OOF87718.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.431
OOF87719.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.431
OOF87720.1
Secretin; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.429
Your Current Organism:
Rodentibacter ratti
NCBI taxonomy Id: 1906745
Other names: Bisgaard Taxon 22, CCUG 69665, DSM 103977, Haemophilus sp. HK445, Haemophilus sp. HK447, Pasteurellaceae bacterium Ac81, Pasteurellaceae bacterium F75, Pasteurellaceae bacterium H1983213011, Pasteurellaceae bacterium Ppn157, Pasteurellaceae bacterium Ppn158, R. ratti, Rodentibacter ratti Adhikary et al. 2017, strain F75
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.