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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AIR98580.1Putative oxidoreductase. (361 aa)    
Predicted Functional Partners:
AIR98581.1
UPF0303-like protein; Belongs to the UPF0303 family.
 
    0.896
AIR98579.1
Transcriptional regulator.
       0.788
AIR98582.1
F420-dependent oxidoreductase.
       0.752
AIR98578.1
Hypothetical protein.
       0.675
nagD
Ribonucleotide monophosphatase NagD; Belongs to the HAD-like hydrolase superfamily.
       0.634
AIR98475.1
Acetolactate synthase; Belongs to the TPP enzyme family.
 
  
 0.604
iolB1
IolB protein.
 
  
 0.597
AIR98575.1
Hypothetical protein.
       0.589
AIS01664.1
Myo-inositol catabolism protein.
 
    0.476
strS
Putative aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.457
Your Current Organism:
Streptomyces glaucescens
NCBI taxonomy Id: 1907
Other names: ATCC 19761, ATCC 23622, Actinomyces glaucescens, BCRC 11478, CBS 499.68, CCRC 11478, CCRC:11478, CECT 3133, DSM 40155, IFO 12774, IMET 43584, INA 8731, ISP 5155, JCM 4377, LMG 19330, LMG:19330, NBRC 12774, NCIMB 9619, NCIMB 9844, NRRL B-2706, NRRL-ISP 5155, S. glaucescens, UNIQEM 147, VKM Ac-617
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