SIP89152.1 protein (Rhizobium sp. RU33A) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SIP89152.1

Mannitol 2-dehydrogenase. (494 aa)

Predicted Functional Partners:

SIP89138.1

0.908

SIP89201.1

0.895

SIP89222.1

0.882

SIP89230.1

0.844

SIP89170.1

0.822

SIQ75820.1

0.818

SIQ25773.1

0.798

SIP89120.1

0.783

SIQ73722.1

0.775

SIP89187.1

0.736

Your Current Organism:

Rhizobium sp. RU33A

NCBI taxonomy Id: 1907413
Other names: R. sp. RU33A

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SIP89120.1	SIP89138.1	SAMN05880561_10156	SAMN05880561_10157	Hypothetical protein.	Haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED.	0.810
SIP89120.1	SIP89152.1	SAMN05880561_10156	SAMN05880561_10158	Hypothetical protein.	Mannitol 2-dehydrogenase.	0.783
SIP89120.1	SIP89170.1	SAMN05880561_10156	SAMN05880561_10159	Hypothetical protein.	D-sorbitol dehydrogenase (acceptor).	0.694
SIP89120.1	SIP89187.1	SAMN05880561_10156	SAMN05880561_10160	Hypothetical protein.	Sorbitol ABC transporter ATP-binding protein.	0.664
SIP89120.1	SIP89201.1	SAMN05880561_10156	SAMN05880561_10161	Hypothetical protein.	Sorbitol ABC transporter membrane protein.	0.674
SIP89120.1	SIP89222.1	SAMN05880561_10156	SAMN05880561_10162	Hypothetical protein.	Sorbitol ABC transporter membrane protein.	0.693
SIP89120.1	SIP89230.1	SAMN05880561_10156	SAMN05880561_10163	Hypothetical protein.	Sorbitol-binding protein /mannitol-binding protein.	0.424
SIP89138.1	SIP89120.1	SAMN05880561_10157	SAMN05880561_10156	Haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED.	Hypothetical protein.	0.810
SIP89138.1	SIP89152.1	SAMN05880561_10157	SAMN05880561_10158	Haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED.	Mannitol 2-dehydrogenase.	0.908
SIP89138.1	SIP89170.1	SAMN05880561_10157	SAMN05880561_10159	Haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED.	D-sorbitol dehydrogenase (acceptor).	0.673
SIP89138.1	SIP89187.1	SAMN05880561_10157	SAMN05880561_10160	Haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED.	Sorbitol ABC transporter ATP-binding protein.	0.665
SIP89138.1	SIP89201.1	SAMN05880561_10157	SAMN05880561_10161	Haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED.	Sorbitol ABC transporter membrane protein.	0.718
SIP89138.1	SIP89222.1	SAMN05880561_10157	SAMN05880561_10162	Haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED.	Sorbitol ABC transporter membrane protein.	0.718
SIP89138.1	SIP89230.1	SAMN05880561_10157	SAMN05880561_10163	Haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED.	Sorbitol-binding protein /mannitol-binding protein.	0.441
SIP89152.1	SIP89120.1	SAMN05880561_10158	SAMN05880561_10156	Mannitol 2-dehydrogenase.	Hypothetical protein.	0.783
SIP89152.1	SIP89138.1	SAMN05880561_10158	SAMN05880561_10157	Mannitol 2-dehydrogenase.	Haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED.	0.908
SIP89152.1	SIP89170.1	SAMN05880561_10158	SAMN05880561_10159	Mannitol 2-dehydrogenase.	D-sorbitol dehydrogenase (acceptor).	0.822
SIP89152.1	SIP89187.1	SAMN05880561_10158	SAMN05880561_10160	Mannitol 2-dehydrogenase.	Sorbitol ABC transporter ATP-binding protein.	0.736
SIP89152.1	SIP89201.1	SAMN05880561_10158	SAMN05880561_10161	Mannitol 2-dehydrogenase.	Sorbitol ABC transporter membrane protein.	0.895
SIP89152.1	SIP89222.1	SAMN05880561_10158	SAMN05880561_10162	Mannitol 2-dehydrogenase.	Sorbitol ABC transporter membrane protein.	0.882