STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMC88642.1Putative ATP-binding cassette transporter. (587 aa)    
Predicted Functional Partners:
recA
RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
    
   0.870
SMD03503.1
ATPase family associated with various cellular activities (AAA).
     
 0.816
SMC52506.1
Putative ATP-binding cassette transporter.
  
  
 
0.674
SMC88636.1
Protein of unknown function.
       0.519
SMC42481.1
SPFH domain, Band 7 family protein.
    
  0.491
SMC57464.1
Protease FtsH subunit HflC; HflC and HflK could regulate a protease.
    
  0.491
SMC57479.1
Protease FtsH subunit HflK; HflC and HflK could encode or regulate a protease.
    
  0.491
Your Current Organism:
Rhizobium sp. RU36D
NCBI taxonomy Id: 1907415
Other names: R. sp. RU36D
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