STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIR30390.1Outer membrane protein (porin). (349 aa)    
Predicted Functional Partners:
SIR09615.1
Phospholipid-binding lipoprotein MlaA.
   
 
 0.895
tolB
TolB protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
   
 
 0.821
SIQ97245.1
OmpA-OmpF porin, OOP family; Belongs to the outer membrane OOP (TC 1.B.6) superfamily.
  
 
 0.801
SIP89747.1
Hypothetical protein.
  
 
   0.792
SIQ17479.1
Hypothetical protein; Belongs to the UPF0319 family.
 
     0.757
crl
Sigma factor-binding protein Crl; Binds to the sigma-S subunit of RNA polymerase, activating expression of sigma-S-regulated genes. Stimulates RNA polymerase holoenzyme formation and may bind to several other sigma factors, such as sigma-70 and sigma-32; Belongs to the Crl family.
  
     0.756
SIQ37575.1
Esterase FrsA; Belongs to the UPF0255 family.
  
    0.753
SIQ73774.1
Protein of unknown function.
  
     0.751
SIR53571.1
Surface polysaccharide O-acyltransferase, integral membrane enzyme.
  
     0.744
SIR41816.1
Murein lipoprotein.
  
   
 0.739
Your Current Organism:
Aeromonas sp. RU39B
NCBI taxonomy Id: 1907416
Other names: A. sp. RU39B
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.