SCX29105.1 protein (Agrobacterium sp. DSM 25559)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SCX29105.1

Mannosyltransferase OCH1. (318 aa)

Predicted Functional Partners:

dppB_7

0.596

SCX34072.1

0.571

kfoC

0.571

gsiA_12

0.537

SCX29118.1

0.537

dppC_4

0.537

SCX29143.1

0.506

SCX29157.1

0.503

pimB_2

0.495

Your Current Organism:

Agrobacterium sp. DSM 25559

NCBI taxonomy Id: 1907666
Other names: A. sp. DSM 25559

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SCX29105.1	SCX29118.1	DSM25559_3277	DSM25559_3279	Mannosyltransferase OCH1.	Putative ABC transporter-binding protein precursor.	0.537
SCX29105.1	SCX29143.1	DSM25559_3277	DSM25559_3282	Mannosyltransferase OCH1.	Undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase.	0.506
SCX29105.1	SCX29157.1	DSM25559_3277	DSM25559_3284	Mannosyltransferase OCH1.	Undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase.	0.503
SCX29105.1	SCX34072.1	DSM25559_3277	DSM25559_4367	Mannosyltransferase OCH1.	Glycosyltransferase, family.	0.571
SCX29105.1	dppB_7	DSM25559_3277	DSM25559_3280	Mannosyltransferase OCH1.	Dipeptide transport system permease protein DppB.	0.596
SCX29105.1	dppC_4	DSM25559_3277	DSM25559_3281	Mannosyltransferase OCH1.	Dipeptide transport system permease protein DppC.	0.537
SCX29105.1	gsiA_12	DSM25559_3277	DSM25559_3278	Mannosyltransferase OCH1.	Glutathione import ATP-binding protein GsiA; Belongs to the ABC transporter superfamily.	0.537
SCX29105.1	kfoC	DSM25559_3277	DSM25559_4368	Mannosyltransferase OCH1.	Chondroitin polymerase.	0.571
SCX29105.1	pimB_2	DSM25559_3277	DSM25559_3283	Mannosyltransferase OCH1.	GDP-mannose-dependent alpha-(1-6)-phosphatidylinositol monomannoside mannosyltransferase.	0.495
SCX29118.1	SCX29105.1	DSM25559_3279	DSM25559_3277	Putative ABC transporter-binding protein precursor.	Mannosyltransferase OCH1.	0.537
SCX29118.1	SCX29143.1	DSM25559_3279	DSM25559_3282	Putative ABC transporter-binding protein precursor.	Undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase.	0.906
SCX29118.1	SCX29157.1	DSM25559_3279	DSM25559_3284	Putative ABC transporter-binding protein precursor.	Undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase.	0.895
SCX29118.1	dppB_7	DSM25559_3279	DSM25559_3280	Putative ABC transporter-binding protein precursor.	Dipeptide transport system permease protein DppB.	0.981
SCX29118.1	dppC_4	DSM25559_3279	DSM25559_3281	Putative ABC transporter-binding protein precursor.	Dipeptide transport system permease protein DppC.	0.986
SCX29118.1	gsiA_12	DSM25559_3279	DSM25559_3278	Putative ABC transporter-binding protein precursor.	Glutathione import ATP-binding protein GsiA; Belongs to the ABC transporter superfamily.	0.856
SCX29118.1	pimB_2	DSM25559_3279	DSM25559_3283	Putative ABC transporter-binding protein precursor.	GDP-mannose-dependent alpha-(1-6)-phosphatidylinositol monomannoside mannosyltransferase.	0.895
SCX29143.1	SCX29105.1	DSM25559_3282	DSM25559_3277	Undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase.	Mannosyltransferase OCH1.	0.506
SCX29143.1	SCX29118.1	DSM25559_3282	DSM25559_3279	Undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase.	Putative ABC transporter-binding protein precursor.	0.906
SCX29143.1	SCX29157.1	DSM25559_3282	DSM25559_3284	Undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase.	Undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase.	0.801
SCX29143.1	dppB_7	DSM25559_3282	DSM25559_3280	Undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase.	Dipeptide transport system permease protein DppB.	0.901