STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OOF57442.1Secretin; Derived by automated computational analysis using gene prediction method: Protein Homology. (462 aa)    
Predicted Functional Partners:
OOF57439.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.977
OOF57438.1
Competence protein ComA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.947
OOF60193.1
Type II secretion system protein F; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.924
OOF57541.1
Peptidoglycan-binding protein LysM; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.920
OOF60194.1
Protein transporter HofB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.917
OOF57441.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.798
OOF57440.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.768
OOF58371.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the bacterial secretin family.
 
  
0.766
OOF60195.1
Prepilin-type N-terminal cleavage/methylation domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the N-Me-Phe pilin family.
 
   
 0.692
OOF57437.1
Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.683
Your Current Organism:
Rodentibacter myodis
NCBI taxonomy Id: 1907939
Other names: Bisgaard Taxon 41, CCUG 69666, DSM 103994, Pasteurellaceae bacterium Ac151, R. myodis, Rodentibacter myodis Adhikary et al. 2017, strain Ac151
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