STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BEN47_02365TPR_REGION domain-containing protein. (1072 aa)    
Predicted Functional Partners:
BEN47_18995
Uncharacterized protein.
  
 
 0.925
BEN47_02360
Uncharacterized protein.
 
    0.904
BEN47_10315
Uncharacterized protein.
 
  
 0.897
BEN47_18830
TPR_REGION domain-containing protein.
 
  
 0.895
BEN47_02340
Uncharacterized protein.
 
     0.819
BEN47_02345
Biopolymer transporter ExbD.
 
  
 0.802
BEN47_04070
OmpA-like domain-containing protein.
 
  
 0.786
BEN47_06510
OstA-like_N domain-containing protein.
 
  
 0.784
BEN47_02350
Biopolymer transporter ExbB.
 
  
 0.768
BEN47_14025
OmpA-like domain-containing protein.
  
  
 0.764
Your Current Organism:
Hymenobacter lapidarius
NCBI taxonomy Id: 1908237
Other names: CCM 8643, H. lapidarius, Hymenobacter lapidarius Sedlacek et al. 2017, Hymenobacter sp. CCM 8643, LMG 29435, LMG:29435, strain P3150
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.